Calcium in PDB 5vpl: Crystal Structure of Der F 1 Complexed with Fab 4C1

The structure of Crystal Structure of Der F 1 Complexed with Fab 4C1, PDB code: 5vpl was solved by M.Chruszcz, L.D.Vailes, M.D.Chapman, A.Pomes, W.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	65.403, 79.428, 72.199, 90.00, 105.20, 90.00
R / Rfree (%)	15.2 / 19.4

The binding sites of Calcium atom in the Crystal Structure of Der F 1 Complexed with Fab 4C1 (pdb code 5vpl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Der F 1 Complexed with Fab 4C1, PDB code: 5vpl:

Calcium binding site 1 out of 1 in the Crystal Structure of Der F 1 Complexed with Fab 4C1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Der F 1 Complexed with Fab 4C1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:19.0 occ:1.00 OD1 A:ASP57 2.2 19.8 1.0 O A:LEU58 2.3 18.5 1.0 OE1 A:GLU92 2.3 21.3 1.0 OE1 A:GLU60 2.3 19.9 1.0 O A:HOH421 2.4 17.0 1.0 O1 A:EDO304 2.4 19.1 1.0 CD A:GLU60 3.3 19.4 1.0 C1 A:EDO304 3.3 21.7 1.0 CD A:GLU92 3.4 22.1 1.0 CG A:ASP57 3.5 21.3 1.0 C A:LEU58 3.5 20.8 1.0 OE2 A:GLU60 3.6 20.1 1.0 N A:LEU58 3.9 21.2 1.0 CG A:GLU92 4.0 23.2 1.0 CB A:GLU92 4.0 23.3 1.0 OD2 A:ASP57 4.1 22.1 1.0 O A:HOH437 4.2 20.2 1.0 C A:ASP57 4.2 22.0 1.0 OE2 A:GLU45 4.2 20.3 1.0 OE2 A:GLU92 4.3 21.4 1.0 N A:GLU60 4.3 19.2 1.0 CA A:LEU58 4.3 21.2 1.0 NE A:ARG27 4.4 20.4 1.0 N A:SER59 4.5 21.0 1.0 O A:HOH520 4.5 21.5 1.0 CA A:SER59 4.6 21.0 1.0 CA A:ASP57 4.6 21.8 1.0 CB A:ASP57 4.6 22.3 1.0 CG A:GLU60 4.7 18.6 1.0 C2 A:EDO304 4.7 22.7 1.0 O A:ASP57 4.8 22.5 1.0 CD A:ARG27 4.8 20.1 1.0 CA A:GLU92 4.9 24.7 1.0 C A:SER59 4.9 20.0 1.0 CZ A:ARG27 4.9 20.7 1.0

M.Chruszcz, A.Pomes, J.Glesner, L.D.Vailes, T.Osinski, P.J.Porebski, K.A.Majorek, P.W.Heymann, T.A.Platts-Mills, W.Minor, M.D.Chapman. Molecular Determinants For Antibody Binding on Group 1 House Dust Mite Allergens. J.Biol.Chem. V. 287 7388 2012.
ISSN: ISSN 0021-9258
PubMed: 22210776
DOI: 10.1074/JBC.M111.311159