Calcium »
PDB 5vll-5w78 »
5vs2 »
Calcium in PDB 5vs2: Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation
Enzymatic activity of Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation
All present enzymatic activity of Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation, PDB code: 5vs2
was solved by
A.J.Reed,
Z.Suo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.64 / 2.33 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 50.940, 80.490, 55.660, 90.00, 107.28, 90.00 |
| R / Rfree (%) | 18.7 / 25 |
Other elements in 5vs2:
The structure of Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation also contains other interesting chemical elements:
| Sodium | (Na) | 2 atoms |
Calcium Binding Sites:
The binding sites of Calcium atom in the Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation
(pdb code 5vs2). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation, PDB code: 5vs2:
Jump to Calcium binding site number: 1; 2; 3;
In total 3 binding sites of Calcium where determined in the Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation, PDB code: 5vs2:
Jump to Calcium binding site number: 1; 2; 3;
Calcium binding site 1 out of 3 in 5vs2
Go back to
Calcium Binding Sites List in 5vs2
Calcium binding site 1 out
of 3 in the Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation within 5.0Å range:
|
Calcium binding site 2 out of 3 in 5vs2
Go back to
Calcium Binding Sites List in 5vs2
Calcium binding site 2 out
of 3 in the Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation within 5.0Å range:
|
Calcium binding site 3 out of 3 in 5vs2
Go back to
Calcium Binding Sites List in 5vs2
Calcium binding site 3 out
of 3 in the Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Human Dna Polymerase Beta Pre-Catalytic 8-Oxog:Da Extension Complex with Dttp Bound in Watson-Crick Conformation within 5.0Å range:
|
Reference:
A.J.Reed,
Z.Suo.
Time-Dependent Extension From An 8-Oxoguanine Lesion By Human Dna Polymerase Beta. J. Am. Chem. Soc. V. 139 9684 2017.
ISSN: ESSN 1520-5126
PubMed: 28682600
DOI: 10.1021/JACS.7B05048
Page generated: Wed Jul 9 10:52:57 2025
ISSN: ESSN 1520-5126
PubMed: 28682600
DOI: 10.1021/JACS.7B05048
Last articles
Cl in 5QCDCl in 5QCA
Cl in 5QBY
Cl in 5QC8
Cl in 5QBV
Cl in 5QBZ
Cl in 5QBW
Cl in 5QB4
Cl in 5QB3
Cl in 5QB1
