Calcium in PDB 5vtm: The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa

The structure of The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa, PDB code: 5vtm was solved by Y.Zhang, Z.Jia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.51 / 2.04
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.546, 76.760, 102.861, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 24.8

The binding sites of Calcium atom in the The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa (pdb code 5vtm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa, PDB code: 5vtm:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ X:Ca401 b:28.6 occ:1.00 O X:VAL77 2.2 32.2 1.0 O X:HOH554 2.3 38.5 1.0 OD1 X:ASP78 2.4 24.0 1.0 OE1 X:GLU82 2.5 29.0 1.0 OE2 X:GLU82 2.5 31.3 1.0 OD1 X:ASP65 2.6 31.5 1.0 OD2 X:ASP65 2.6 32.4 1.0 CD X:GLU82 2.8 33.4 1.0 CG X:ASP65 2.9 33.6 1.0 C X:VAL77 3.3 31.0 1.0 CG X:ASP78 3.4 27.9 1.0 CA X:ASP78 3.6 27.9 1.0 N X:ASP78 3.9 25.7 1.0 CB X:ASP78 3.9 24.7 1.0 O X:ASP65 4.2 37.1 1.0 CG X:GLU82 4.3 28.9 1.0 NE1 X:TRP84 4.3 25.9 1.0 CB X:ASP65 4.4 31.5 1.0 OD2 X:ASP78 4.4 25.4 1.0 NH1 X:ARG300 4.6 26.4 1.0 CA X:VAL77 4.6 30.5 1.0 CD1 X:TRP84 4.6 27.2 1.0 C X:ASP65 4.7 38.0 1.0 N X:VAL77 4.8 33.9 1.0 C X:ASP78 4.8 27.8 1.0 NH2 X:ARG300 4.9 25.7 1.0 CB X:GLU82 4.9 29.7 1.0 N X:HIS79 5.0 23.7 1.0

Calcium binding site 2 out of 3 in the The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ X:Ca402 b:19.2 occ:1.00 OE2 X:GLU167 2.3 14.4 1.0 OD1 X:ASP152 2.4 18.9 1.0 OD2 X:ASP155 2.4 19.7 1.0 O X:ASN159 2.4 20.5 1.0 OD1 X:ASP157 2.4 19.4 1.0 OD1 X:ASP155 2.7 18.2 1.0 O X:HOH638 2.7 22.8 1.0 CG X:ASP155 2.9 22.1 1.0 CG X:ASP157 3.3 20.2 1.0 CG X:ASP152 3.4 19.7 1.0 OD2 X:ASP157 3.5 27.8 1.0 C X:ASN159 3.5 19.0 1.0 CD X:GLU167 3.5 16.0 1.0 CA X:CA403 3.9 18.5 1.0 N X:ASN159 3.9 16.9 1.0 CA X:ASP152 4.0 18.1 1.0 CB X:ASP152 4.0 15.9 1.0 CG X:GLU167 4.2 16.5 1.0 CA X:ASN159 4.2 17.3 1.0 OD2 X:ASP152 4.2 18.6 1.0 O X:ASP157 4.3 21.7 1.0 OE1 X:GLN161 4.4 44.0 1.0 CB X:ASP155 4.4 20.9 1.0 N X:PRO160 4.5 23.6 1.0 N X:GLN161 4.5 23.2 1.0 OE1 X:GLU167 4.5 15.7 1.0 C X:PRO160 4.6 27.4 1.0 C X:ASP157 4.6 21.4 1.0 CA X:PRO160 4.6 25.2 1.0 O X:ASP152 4.6 16.3 1.0 CB X:ASN159 4.6 18.0 1.0 CB X:ASP157 4.6 22.6 1.0 O X:HOH630 4.7 40.7 1.0 C X:GLN158 4.8 16.6 1.0 C X:ASP152 4.9 15.7 1.0

Calcium binding site 3 out of 3 in the The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Crystal Structure of Minor Pseudopilin Ternary Complex of Xcpvwx From the Type 2 Secretion System of Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ X:Ca403 b:18.5 occ:1.00 OD1 X:ASP155 2.2 18.2 1.0 O X:ASP152 2.3 16.3 1.0 OD1 X:ASN182 2.4 15.4 1.0 O X:ASP157 2.4 21.7 1.0 O X:ASP155 2.5 18.1 1.0 OE2 X:GLU167 2.5 14.4 1.0 OE1 X:GLU167 2.5 15.7 1.0 CD X:GLU167 2.8 16.0 1.0 CG X:ASN182 3.3 18.9 1.0 C X:ASP155 3.4 18.8 1.0 C X:ASP152 3.4 15.7 1.0 CG X:ASP155 3.5 22.1 1.0 C X:ASP157 3.6 21.4 1.0 CA X:CA402 3.9 19.2 1.0 CA X:ASP152 4.0 18.1 1.0 N X:ASP155 4.0 18.2 1.0 CA X:ASP155 4.1 20.3 1.0 N X:ASP157 4.1 21.6 1.0 ND2 X:ASN182 4.2 17.6 1.0 CB X:ASN182 4.2 19.6 1.0 C X:ALA156 4.3 21.3 1.0 CA X:ASN182 4.3 15.8 1.0 O X:HOH574 4.3 14.8 1.0 OD2 X:ASP155 4.3 19.7 1.0 CB X:ASP155 4.4 20.9 1.0 CG X:GLU167 4.4 16.5 1.0 OD1 X:ASP157 4.4 19.4 1.0 N X:ALA156 4.4 20.4 1.0 CA X:ASP157 4.5 20.5 1.0 CB X:ASP152 4.5 15.9 1.0 O X:TRP153 4.5 16.1 1.0 N X:GLN158 4.5 16.2 1.0 N X:TRP153 4.5 15.4 1.0 O X:ALA156 4.5 22.0 1.0 CA X:GLN158 4.6 16.8 1.0 C X:TRP153 4.6 14.8 1.0 CG X:ASP157 4.7 20.2 1.0 CA X:ALA156 4.8 23.3 1.0 CA X:TRP153 4.8 15.0 1.0 OD1 X:ASP152 4.9 18.9 1.0 C X:LEU154 4.9 18.1 1.0 OD2 X:ASP157 5.0 27.8 1.0 N X:ASN182 5.0 14.4 1.0

Y.Zhang, F.Faucher, W.Zhang, S.Wang, N.Neville, K.Poole, J.Zheng, Z.Jia. Structure-Guided Disruption of the Pseudopilus Tip Complex Inhibits the Type II Secretion in Pseudomonas Aeruginosa. Plos Pathog. V. 14 07343 2018.
ISSN: ESSN 1553-7374
PubMed: 30346996
DOI: 10.1371/JOURNAL.PPAT.1007343