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Calcium in PDB 5vwm: Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor

Enzymatic activity of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor

All present enzymatic activity of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor:
3.5.1.108;

Protein crystallography data

The structure of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor, PDB code: 5vwm was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.30 / 1.80
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.850, 47.590, 48.410, 111.30, 109.00, 98.39
R / Rfree (%) 13.8 / 17.9

Other elements in 5vwm:

The structure of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor (pdb code 5vwm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor, PDB code: 5vwm:

Calcium binding site 1 out of 1 in 5vwm

Go back to Calcium Binding Sites List in 5vwm
Calcium binding site 1 out of 1 in the Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir- 090 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca404

b:11.2
occ:0.64
 OE2 A:GLU59 2.3 33.4 1.0
O A:HOH591 2.4 18.4 1.0
O A:HOH662 2.4 24.6 1.0
O1 A:EDO406 2.4 25.9 1.0
O A:THR61 2.4 19.1 1.0
OG1 A:THR61 2.5 22.6 1.0
O2 A:EDO406 2.6 16.6 1.0
C1 A:EDO406 3.2 25.3 1.0
CD A:GLU59 3.3 37.1 1.0
C2 A:EDO406 3.4 20.6 1.0
C A:THR61 3.5 15.1 1.0
CG A:GLU59 3.5 29.6 1.0
CB A:THR61 3.7 20.3 1.0
CA A:THR61 3.9 16.7 1.0
N A:THR61 4.0 14.7 1.0
O A:HOH791 4.3 27.5 1.0
O A:HOH575 4.3 22.1 0.9
OG1 A:THR65 4.4 11.6 1.0
OE1 A:GLU59 4.4 35.9 1.0
O A:SER63 4.6 10.7 1.0
N A:MET62 4.6 14.0 1.0
CB A:MET62 4.6 13.6 1.0
N A:SER63 4.7 7.0 1.0
CB A:GLU59 4.7 27.6 1.0
CG A:MET62 4.9 13.8 1.0
CG2 A:THR61 4.9 20.5 1.0
C A:THR60 4.9 22.2 1.0
OG A:SER63 5.0 15.3 1.0

Reference:

S.L.Delker, S.J.Mayclin, J.N.Phan, J.Abendroth, D.Lorimer, T.E.Edwards. Crystal Structure of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase (Lpxc) From Pseudomonas Aeruginosa in Complex with Chir-090 Inhibitor To Be Published.
Page generated: Mon Jul 15 12:38:49 2024

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