Calcium in PDB 5wd6: Bovine Salivary Protein Form 30B

Protein crystallography data

The structure of Bovine Salivary Protein Form 30B, PDB code: 5wd6 was solved by H.Zhang, V.L.Arcus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.43 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.650, 59.570, 89.940, 90.00, 106.25, 90.00
R / Rfree (%) 20.5 / 25.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Bovine Salivary Protein Form 30B (pdb code 5wd6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Bovine Salivary Protein Form 30B, PDB code: 5wd6:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5wd6

Go back to Calcium Binding Sites List in 5wd6
Calcium binding site 1 out of 2 in the Bovine Salivary Protein Form 30B


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Bovine Salivary Protein Form 30B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:38.6
occ:1.00
O A:HOH408 2.4 29.5 1.0
O A:HOH416 2.4 27.6 1.0
O B:HOH346 2.4 32.2 1.0
O B:HOH310 2.5 30.5 1.0
OD1 A:ASN84 2.5 30.1 1.0
OE2 A:GLU87 2.7 23.5 1.0
OE1 A:GLU87 2.9 24.4 1.0
CD A:GLU87 3.1 25.3 1.0
CG A:ASN84 3.8 33.0 1.0
OE2 B:GLU142 4.1 34.8 1.0
NH1 B:ARG104 4.3 29.9 1.0
OE1 A:GLN109 4.4 32.0 1.0
O A:HOH517 4.5 35.5 1.0
CG A:GLU87 4.5 19.4 1.0
ND2 A:ASN84 4.5 33.6 1.0
O A:VAL110 4.6 25.4 1.0
NH2 B:ARG106 4.6 31.1 1.0
O A:HOH481 4.6 46.6 1.0
CA A:ASN84 4.7 28.7 1.0
O B:HOH313 4.7 37.1 1.0
CB A:ASN84 4.8 32.1 1.0
N A:ASN84 4.8 26.9 1.0
OE1 B:GLU142 4.9 35.0 1.0
CD B:GLU142 4.9 36.2 1.0

Calcium binding site 2 out of 2 in 5wd6

Go back to Calcium Binding Sites List in 5wd6
Calcium binding site 2 out of 2 in the Bovine Salivary Protein Form 30B


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Bovine Salivary Protein Form 30B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:23.0
occ:1.00
O A:HOH463 2.4 26.8 1.0
O A:HOH449 2.4 21.9 1.0
O A:HOH466 4.2 24.9 1.0
O A:GLU47 4.3 23.8 1.0
O A:HOH495 4.4 25.2 1.0

Reference:

H.Zhang, J.Burrows, G.L.Card, G.Attwood, T.T.Wheeler, V.L.Arcus. The Three Dimensional Structure of Bovine Salivary Protein 30B (BSP30B) and Its Interaction with Specific Rumen Bacteria. Plos One V. 14 06709 2019.
ISSN: ESSN 1932-6203
PubMed: 30978191
DOI: 10.1371/JOURNAL.PONE.0206709
Page generated: Sat Dec 12 05:48:43 2020

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