Calcium in PDB 5x2b: Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap

Protein crystallography data

The structure of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap, PDB code: 5x2b was solved by M.Kanekiyo, T.Teramoto, Y.Kakuta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.08
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 166.174, 81.127, 166.180, 90.00, 119.95, 90.00
R / Rfree (%) 22.1 / 23.6

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap (pdb code 5x2b). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 20 binding sites of Calcium where determined in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap, PDB code: 5x2b:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 1 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca302

b:44.1
occ:1.00
O A:ASP171 2.4 29.9 1.0
O A:HOH523 2.5 28.4 1.0
O A:VAL174 2.5 24.7 1.0
O C:HOH456 2.8 30.2 1.0
O A:LYS169 2.9 28.5 1.0
OE1 C:GLU167 3.0 52.2 1.0
C A:ASP171 3.4 34.0 1.0
OE2 C:GLU167 3.5 49.4 1.0
CD C:GLU167 3.6 36.8 1.0
C A:VAL174 3.7 27.1 1.0
O C:HOH510 3.8 57.7 1.0
C A:LYS169 3.9 44.7 1.0
C A:ASN170 3.9 26.6 1.0
N A:ASP171 4.0 27.9 1.0
CA A:LYS172 4.1 32.5 1.0
CA A:ASN170 4.2 29.9 1.0
O A:ASN170 4.2 31.9 1.0
N A:LYS172 4.2 30.4 1.0
C A:LYS172 4.3 24.9 1.0
CA A:ASP171 4.4 20.1 1.0
N A:VAL174 4.4 26.4 1.0
CB A:VAL174 4.4 21.5 1.0
N A:ASN170 4.5 34.7 1.0
CA A:VAL174 4.5 24.3 1.0
O A:LYS172 4.5 32.5 1.0
O A:HOH468 4.7 29.5 1.0
N A:LEU175 4.7 21.5 1.0
CG1 A:VAL174 4.8 29.5 1.0
CA A:LYS169 4.9 31.1 1.0
CA A:LEU175 4.9 26.1 1.0
N A:ASN173 5.0 20.3 1.0
CG C:GLU167 5.0 31.3 1.0

Calcium binding site 2 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 2 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:46.5
occ:1.00
O A:HOH429 2.2 55.7 1.0
O A:GLU98 2.3 49.4 1.0
O A:HOH467 2.4 39.6 1.0
O B:HOH514 2.6 50.8 1.0
OE1 A:GLU98 2.6 46.8 1.0
O A:HOH528 2.6 50.6 1.0
OD2 B:ASP160 2.8 53.9 1.0
O B:HOH471 2.9 35.8 1.0
O A:HOH484 3.1 33.0 1.0
C A:GLU98 3.3 32.5 1.0
CD A:GLU98 3.3 47.8 1.0
OE2 A:GLU98 3.7 42.0 1.0
CG B:ASP160 3.7 35.0 1.0
CA A:MET99 3.9 32.4 1.0
N A:MET99 4.0 16.7 1.0
OD1 B:ASP160 4.2 31.3 1.0
CA A:GLU98 4.3 15.4 1.0
OD1 A:ASP31 4.4 21.9 1.0
CG A:GLU98 4.4 33.2 1.0
C A:MET99 4.5 36.5 1.0
CB A:GLU98 4.5 29.4 1.0
O A:LEU100 4.6 29.3 1.0
O A:HOH532 4.6 36.3 1.0
O A:MET99 4.6 39.8 1.0
OD2 A:ASP31 4.7 33.2 1.0
NZ A:LYS105 4.8 20.9 1.0
CB B:ASP160 4.8 19.5 1.0
O A:HOH417 4.9 30.5 1.0
CG A:ASP31 5.0 28.4 1.0

Calcium binding site 3 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 3 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:53.5
occ:1.00
N A:ASP251 2.4 39.0 1.0
CB A:ASP251 2.4 34.2 1.0
OD1 A:ASP120 2.6 41.8 1.0
O A:VAL248 2.8 41.2 1.0
CA A:ASP251 2.9 41.0 1.0
O A:HOH449 3.0 40.6 1.0
CG A:ASP120 3.0 39.6 1.0
N A:GLY250 3.3 46.8 1.0
OD2 A:ASP120 3.5 34.3 1.0
C A:GLY250 3.5 42.0 1.0
C A:VAL248 3.6 41.4 1.0
CB A:ASP120 3.7 18.8 1.0
CG A:ASP251 3.8 43.0 1.0
CG1 A:VAL248 3.8 38.9 1.0
NH2 A:ARG116 3.8 31.5 1.0
C A:VAL249 3.9 54.0 1.0
CA A:GLY250 4.0 34.4 1.0
C A:ASP251 4.1 48.5 1.0
O3P A:A3P301 4.1 28.5 1.0
CA A:VAL249 4.1 47.5 1.0
N A:VAL249 4.1 30.7 1.0
N A:TRP252 4.2 42.3 1.0
OD2 A:ASP251 4.3 52.2 1.0
NH2 A:ARG245 4.5 50.6 1.0
CA A:VAL248 4.5 50.0 1.0
CA A:ASP120 4.6 23.3 1.0
O A:GLY250 4.6 39.3 1.0
OD1 A:ASP251 4.6 48.6 1.0
N A:VAL248 4.6 41.6 1.0
CZ A:ARG116 4.8 40.8 1.0
O A:HOH477 4.8 33.1 1.0
CB A:VAL248 4.8 40.3 1.0
O A:VAL249 4.9 40.4 1.0

Calcium binding site 4 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 4 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca302

b:40.2
occ:1.00
O B:HOH403 2.2 35.7 1.0
O B:HOH470 2.3 39.2 1.0
O B:GLU98 2.4 23.7 1.0
O B:HOH459 2.5 33.0 1.0
OE1 B:GLU98 2.6 47.3 1.0
O A:HOH464 2.6 30.0 1.0
O A:HOH425 2.9 29.5 1.0
O B:HOH526 3.1 44.9 1.0
C B:GLU98 3.4 23.0 1.0
CD B:GLU98 3.4 36.7 1.0
O B:HOH506 3.5 55.0 1.0
OE2 B:GLU98 3.6 41.7 1.0
CA B:MET99 3.6 27.9 1.0
O B:MET99 3.9 36.8 1.0
OD1 A:ASP160 3.9 44.3 1.0
C B:MET99 3.9 26.6 1.0
N B:MET99 4.0 25.4 1.0
OD2 B:ASP31 4.2 34.3 1.0
O B:HOH465 4.2 41.9 1.0
OD1 B:ASP31 4.3 35.7 1.0
CG A:ASP160 4.4 40.3 1.0
O B:LEU100 4.4 29.9 1.0
O B:HOH528 4.4 51.0 1.0
OD2 A:ASP160 4.5 34.3 1.0
CG B:ASP31 4.6 19.9 1.0
CA B:GLU98 4.6 18.6 1.0
CG B:GLU98 4.7 33.1 1.0
NZ B:LYS105 4.8 27.4 1.0
N B:LEU100 4.8 20.5 1.0
CB B:MET99 4.9 24.4 1.0
CB B:GLU98 5.0 32.9 1.0

Calcium binding site 5 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 5 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca303

b:44.8
occ:1.00
O B:HOH444 2.4 75.0 1.0
O B:TYR155 2.5 29.6 1.0
CB B:TYR155 3.1 21.5 1.0
CA B:TYR155 3.2 28.3 1.0
C B:TYR155 3.2 32.3 1.0
O B:HIS94 3.3 29.5 1.0
CD1 B:TYR155 3.3 36.7 1.0
ND1 B:HIS161 3.4 33.2 1.0
CG B:TYR155 3.6 35.9 1.0
N B:ASN96 3.6 40.1 1.0
O B:HOH456 3.7 28.3 1.0
CE1 B:HIS161 3.7 26.6 1.0
C B:LEU95 4.0 27.9 1.0
CB B:ASN96 4.1 27.1 1.0
CA B:LEU95 4.2 17.0 1.0
CA B:ASN96 4.3 30.6 1.0
CE B:MET99 4.4 50.9 1.0
CG B:ASN96 4.4 21.6 1.0
C B:HIS94 4.4 20.8 1.0
CE1 B:TYR155 4.5 19.9 1.0
N B:GLY156 4.5 20.6 1.0
N B:TYR155 4.6 28.3 1.0
CG2 B:ILE16 4.6 15.1 1.0
CD1 B:ILE16 4.6 23.8 1.0
ND2 B:ASN96 4.6 32.4 1.0
CG B:HIS161 4.7 24.8 1.0
CE2 B:PHE18 4.8 31.9 1.0
O B:LEU95 4.8 31.7 1.0
N B:LEU95 4.8 23.9 1.0
CZ B:PHE18 4.9 23.2 1.0
O B:HOH455 4.9 48.8 1.0
OD1 B:ASN96 5.0 22.4 1.0
CD2 B:TYR155 5.0 37.5 1.0

Calcium binding site 6 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 6 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca304

b:69.0
occ:1.00
O B:ASN132 2.1 37.9 1.0
O B:LEU135 2.1 38.4 1.0
NH2 D:ARG211 2.5 62.0 1.0
O B:TYR129 2.6 46.0 1.0
C B:ASN132 2.7 26.7 1.0
NH1 D:ARG211 2.7 54.2 1.0
O D:HOH429 2.7 43.0 1.0
CZ D:ARG211 3.0 64.7 1.0
N B:PRO133 3.2 36.4 1.0
C B:LEU135 3.2 43.7 1.0
CA B:PRO133 3.3 30.9 1.0
N B:ASN132 3.5 53.1 1.0
C B:TYR129 3.6 52.3 1.0
CA B:ASN132 3.7 33.5 1.0
N B:LEU135 3.8 38.4 1.0
C B:PRO133 3.9 38.4 1.0
N B:SER137 3.9 42.3 1.0
CA B:LEU135 4.0 18.1 1.0
O B:HOH530 4.1 45.5 1.0
CB B:LEU135 4.2 24.9 1.0
N B:PRO136 4.2 33.0 1.0
O B:ARG130 4.2 48.2 1.0
C B:ARG130 4.3 45.3 1.0
NE D:ARG211 4.3 83.2 1.0
C B:ASP131 4.3 50.3 1.0
O B:PRO133 4.3 42.9 1.0
CA B:TYR129 4.4 43.8 1.0
N B:ASN134 4.5 40.6 1.0
N B:ASP131 4.5 42.0 1.0
N B:ARG130 4.5 33.8 1.0
CD B:PRO133 4.5 36.5 1.0
O B:TYR128 4.5 39.3 1.0
CB B:ASN132 4.6 35.4 1.0
CA B:PRO136 4.6 40.8 1.0
CA B:SER137 4.6 47.0 1.0
C B:PRO136 4.6 40.2 1.0
CB B:SER137 4.6 42.0 1.0
CB B:PRO133 4.7 42.7 1.0
CA B:ARG130 4.7 33.8 1.0
CA B:ASP131 4.9 40.0 1.0
C B:ASN134 5.0 40.6 1.0

Calcium binding site 7 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 7 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca302

b:47.2
occ:1.00
O D:GLU98 2.5 27.9 0.6
O D:HOH442 2.5 42.2 1.0
O D:HOH440 2.6 29.0 1.0
O E:HOH518 2.6 41.0 1.0
O D:GLU98 2.7 28.2 0.4
O E:HOH494 2.8 47.6 1.0
OE2 D:GLU98 3.1 29.5 0.4
C D:GLU98 3.6 26.4 0.6
O D:HOH445 3.7 36.3 1.0
C D:GLU98 3.7 26.4 0.4
CD D:GLU98 3.9 33.2 0.4
CA D:MET99 3.9 17.7 1.0
OD2 D:ASP31 4.0 34.6 1.0
O D:LEU100 4.2 31.2 1.0
CG D:GLU98 4.2 21.0 0.4
N D:MET99 4.3 29.9 1.0
C D:MET99 4.3 28.6 1.0
O D:HOH495 4.4 36.5 1.0
OD1 D:ASP31 4.4 40.7 1.0
O D:MET99 4.4 33.7 1.0
CG D:ASP31 4.6 32.4 1.0
OD1 E:ASP160 4.6 36.0 1.0
O D:HOH540 4.7 58.7 1.0
NZ D:LYS105 4.7 39.2 1.0
CA D:GLU98 4.7 27.8 0.6
CA D:GLU98 4.7 22.3 0.4
OD2 E:ASP160 4.8 35.6 1.0
CG E:ASP160 4.8 24.5 1.0
O D:HOH458 4.8 42.3 1.0
OE1 D:GLU98 4.8 34.3 0.4
N D:LEU100 5.0 25.2 1.0

Calcium binding site 8 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 8 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca303

b:43.9
occ:1.00
O D:VAL174 2.0 31.8 1.0
O D:LYS169 2.4 21.1 1.0
O F:HOH464 2.5 41.8 1.0
O D:ASP171 2.6 48.1 1.0
O F:HOH499 3.0 34.3 1.0
OE1 F:GLU167 3.1 47.6 1.0
C D:VAL174 3.2 26.6 1.0
C D:ASP171 3.6 38.0 1.0
C D:LYS169 3.6 38.0 1.0
OE2 F:GLU167 3.7 47.3 1.0
CD F:GLU167 3.7 48.0 1.0
CA D:VAL174 4.0 21.6 1.0
C D:ASN170 4.0 33.2 1.0
O D:HOH508 4.0 31.5 1.0
N D:VAL174 4.0 25.3 1.0
N D:ASP171 4.1 25.2 1.0
CB D:VAL174 4.1 23.8 1.0
CA D:ASN170 4.2 28.6 1.0
N D:LEU175 4.2 26.8 1.0
N D:LYS172 4.3 30.9 1.0
O D:LYS172 4.3 36.1 1.0
CA D:LYS172 4.3 36.6 1.0
N D:ASN170 4.4 32.5 1.0
O F:HOH436 4.4 35.3 1.0
CA D:LEU175 4.4 24.8 1.0
C D:LYS172 4.4 31.7 1.0
O D:ASN170 4.4 32.9 1.0
CA D:ASP171 4.5 29.9 1.0
CA D:LYS169 4.5 38.4 1.0
CG1 D:VAL174 4.7 25.8 1.0
CG D:LYS169 4.8 33.4 1.0
O D:HIS168 4.9 24.1 1.0

Calcium binding site 9 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 9 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca304

b:58.4
occ:1.00
N D:ARG89 2.2 37.9 1.0
OD1 D:ASP39 2.3 27.5 1.0
OD1 D:ASP38 2.6 41.0 1.0
OD2 D:ASP38 2.7 57.6 1.0
NE D:ARG89 2.7 29.3 1.0
CG D:ARG89 2.9 16.1 1.0
CG D:ASP38 2.9 37.7 1.0
C D:ARG88 3.0 44.2 1.0
CB D:ARG89 3.0 30.1 1.0
CA D:ARG88 3.1 47.3 1.0
O D:LYS87 3.1 44.6 1.0
O D:HOH411 3.1 56.8 1.0
CA D:ARG89 3.1 37.2 1.0
CD D:ARG89 3.2 33.6 1.0
CG D:ASP39 3.5 14.9 1.0
CD D:ARG36 3.6 23.9 1.0
NH1 D:ARG36 3.7 37.2 1.0
CZ D:ARG89 3.8 39.8 1.0
CA D:ASP39 3.8 22.9 1.0
C D:LYS87 3.9 38.3 1.0
N D:ARG88 3.9 43.3 1.0
N D:ASP39 4.0 26.7 1.0
O D:HOH430 4.1 52.7 1.0
O D:ARG89 4.1 42.9 1.0
NH2 D:ARG89 4.1 49.7 1.0
C D:ARG89 4.1 20.3 1.0
O D:ARG88 4.1 31.3 1.0
CB D:ARG36 4.1 26.6 1.0
CB D:ASP39 4.2 20.0 1.0
CB D:ARG88 4.2 37.8 1.0
CG D:ARG88 4.3 32.4 1.0
CB D:ASP38 4.3 36.8 1.0
OD2 D:ASP39 4.4 21.7 1.0
C D:ASP38 4.5 31.8 1.0
CG D:ARG36 4.5 22.8 1.0
NE D:ARG36 4.6 35.0 1.0
CZ D:ARG36 4.6 34.2 1.0
O D:ASP38 4.8 40.4 1.0
NH1 D:ARG89 4.9 26.4 1.0

Calcium binding site 10 out of 20 in 5x2b

Go back to Calcium Binding Sites List in 5x2b
Calcium binding site 10 out of 20 in the Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca302

b:43.5
occ:1.00
O E:HOH446 2.3 34.4 1.0
O E:GLU98 2.4 26.8 1.0
O E:HOH423 2.5 46.1 1.0
O E:HOH458 2.8 35.4 1.0
O D:HOH486 2.9 38.6 1.0
O D:HOH450 3.0 33.3 1.0
O E:HOH442 3.2 41.6 1.0
C E:GLU98 3.6 24.6 1.0
OD1 D:ASP160 3.8 37.8 1.0
OD2 E:ASP31 3.9 38.3 1.0
O D:HOH542 4.0 29.7 1.0
CA E:MET99 4.0 28.1 1.0
CG D:ASP160 4.2 34.3 1.0
OD1 E:ASP31 4.3 32.6 1.0
N E:MET99 4.3 27.3 1.0
OD2 D:ASP160 4.3 30.1 1.0
O E:MET99 4.3 25.6 1.0
C E:MET99 4.3 25.8 1.0
O E:LEU100 4.4 33.7 1.0
CG E:ASP31 4.5 26.5 1.0
NZ E:LYS105 4.6 25.4 1.0
CA E:GLU98 4.6 26.3 1.0

Reference:

S.Tanaka, Y.Kakuta. Crystal Structure of Mouse Sulfotransferase SULT7A1 Complexed with Pap To Be Published.
Page generated: Sat Dec 12 05:50:19 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy