Calcium in PDB 5xpx: Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas

Enzymatic activity of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas

All present enzymatic activity of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas:
3.1.1.3;

Protein crystallography data

The structure of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas, PDB code: 5xpx was solved by R.N.Z.R.A.Rahman, W.Latip, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.753, 94.693, 126.431, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 27.7

Other elements in 5xpx:

The structure of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas (pdb code 5xpx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas, PDB code: 5xpx:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5xpx

Go back to Calcium Binding Sites List in 5xpx
Calcium binding site 1 out of 2 in the Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:38.0
occ:1.00
O A:PRO366 2.4 22.1 1.0
O A:GLY286 2.4 18.0 1.0
OD2 A:ASP365 2.6 25.5 1.0
OE2 A:GLU360 2.7 22.4 1.0
C A:PRO366 3.6 21.8 1.0
C A:GLY286 3.6 18.5 1.0
CG A:ASP365 3.7 23.8 1.0
CD A:GLU360 3.7 22.6 1.0
CG A:GLU360 4.0 22.1 1.0
CA A:GLY286 4.3 19.0 1.0
N A:PRO366 4.3 21.8 1.0
NH1 A:ARG271 4.3 26.1 1.0
CB A:ASP365 4.3 22.1 1.0
N A:ASN288 4.4 17.9 1.0
CA A:PRO366 4.5 21.8 1.0
C A:ASP365 4.5 21.4 1.0
CG A:PRO366 4.5 21.8 1.0
N A:ASN367 4.6 22.6 1.0
C A:MET287 4.6 18.1 1.0
CD A:PRO366 4.6 22.3 1.0
N A:MET287 4.7 18.7 1.0
CA A:ASN367 4.7 22.4 1.0
CB A:ASN367 4.7 21.7 1.0
O A:ASP365 4.8 22.4 1.0
OD1 A:ASP365 4.8 24.6 1.0
CA A:ASN288 4.8 18.4 1.0
CA A:MET287 4.8 18.8 1.0
OE1 A:GLU360 4.9 24.4 1.0
CB A:PRO366 4.9 21.7 1.0

Calcium binding site 2 out of 2 in 5xpx

Go back to Calcium Binding Sites List in 5xpx
Calcium binding site 2 out of 2 in the Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca502

b:48.2
occ:1.00
O E:GLY286 2.5 23.1 1.0
O E:PRO366 2.6 30.4 1.0
OE2 E:GLU360 2.7 26.0 1.0
OD2 E:ASP365 2.8 30.7 1.0
C E:PRO366 3.6 29.6 1.0
C E:GLY286 3.6 23.0 1.0
CD E:GLU360 3.8 26.2 1.0
CG E:ASP365 3.9 31.2 1.0
CG E:GLU360 4.2 25.4 1.0
CA E:GLY286 4.2 25.2 1.0
N E:PRO366 4.3 28.3 1.0
CA E:PRO366 4.3 28.4 1.0
CB E:PRO366 4.3 27.9 1.0
N E:ASN367 4.5 30.9 1.0
C E:ASP365 4.6 28.5 1.0
OD1 E:ASP365 4.6 33.2 1.0
N E:ASN288 4.7 19.9 1.0
CA E:ASN367 4.7 30.6 1.0
N E:MET287 4.7 21.7 1.0
C E:MET287 4.7 21.0 1.0
NH2 E:ARG271 4.7 28.6 1.0
CD E:PRO366 4.7 28.3 1.0
CB E:ASN367 4.8 30.9 1.0
CB E:ASP365 4.8 30.4 1.0
O E:ASP365 4.9 25.4 1.0
CA E:MET287 4.9 21.4 1.0
OE1 E:GLU360 5.0 25.6 1.0

Reference:

R.N.Z.R.A.Rahman, W.Latip. Structure Elucidation of Truncated AMS3 Lipase From An Antarctic Pseudomonas To Be Published.
Page generated: Sat Dec 12 05:52:11 2020

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