Atomistry » Calcium » PDB 5xkf-5xu9 » 5xsm
Atomistry »
  Calcium »
    PDB 5xkf-5xu9 »
      5xsm »

Calcium in PDB 5xsm: Crystal Structure of Transketolase in Complex with Tpp Intermediate IV From Pichia Stipitis

Enzymatic activity of Crystal Structure of Transketolase in Complex with Tpp Intermediate IV From Pichia Stipitis

All present enzymatic activity of Crystal Structure of Transketolase in Complex with Tpp Intermediate IV From Pichia Stipitis:
2.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Transketolase in Complex with Tpp Intermediate IV From Pichia Stipitis, PDB code: 5xsm was solved by T.L.Li, N.S.Hsu, Y.L.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.89 / 0.97
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 100.946, 184.259, 98.793, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 14.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Transketolase in Complex with Tpp Intermediate IV From Pichia Stipitis (pdb code 5xsm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Transketolase in Complex with Tpp Intermediate IV From Pichia Stipitis, PDB code: 5xsm:

Calcium binding site 1 out of 1 in 5xsm

Go back to Calcium Binding Sites List in 5xsm
Calcium binding site 1 out of 1 in the Crystal Structure of Transketolase in Complex with Tpp Intermediate IV From Pichia Stipitis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Transketolase in Complex with Tpp Intermediate IV From Pichia Stipitis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca701

b:9.4
occ:1.00
 OA1 A:8EO705 2.2 9.0 0.8
O A:ILE187 2.3 10.0 1.0
OD1 A:ASN185 2.3 6.8 1.0
O A:HOH969 2.3 6.7 1.0
OD2 A:ASP155 2.4 8.8 1.0
OB3 A:8EO705 2.5 8.7 0.8
CG A:ASN185 3.3 6.1 1.0
CG A:ASP155 3.3 7.1 1.0
C A:ILE187 3.4 7.9 1.0
PB A:8EO705 3.4 6.9 0.8
PA A:8EO705 3.5 7.3 0.8
ND2 A:ASN185 3.5 6.8 1.0
OB1 A:8EO705 3.5 9.1 0.8
CB A:ASP155 3.7 6.3 1.0
OA3 A:8EO705 3.7 7.6 0.8
N A:ILE187 3.9 7.1 1.0
N A:ASP155 4.1 5.8 1.0
CA A:ILE187 4.2 7.7 1.0
OD1 A:ASP155 4.3 7.5 1.0
N A:SER188 4.4 7.8 1.0
O A:ASP183 4.4 6.6 1.0
O A:HOH1055 4.4 10.8 1.0
OA2 A:8EO705 4.4 9.7 0.8
O8 A:8EO705 4.5 9.1 0.8
CA A:ASP155 4.6 5.7 1.0
CA A:SER188 4.6 8.0 1.0
N A:LYS186 4.6 6.2 1.0
CB A:ASN185 4.6 6.6 1.0
CB A:ILE187 4.8 8.6 1.0
N A:ASN185 4.9 5.8 1.0
C A:ASN185 4.9 6.2 1.0
OB2 A:8EO705 4.9 9.9 0.8
CB A:SER188 4.9 8.7 1.0
C A:LYS186 5.0 6.6 1.0
CA A:ASN185 5.0 6.3 1.0

Reference:

N.S.Hsu, Y.L.Wang, K.H.Lin, C.F.Chang, S.Y.Lyu, L.J.Hsu, Y.C.Liu, C.Y.Chang, C.J.Wu, T.L.Li. The Mesomeric Effect of Thiazolium on Non-Kekule Diradicals in Pichia Stipitis Transketolase. Angew. Chem. Int. Ed. Engl. V. 57 1802 2018.
ISSN: ESSN 1521-3773
PubMed: 29243887
DOI: 10.1002/ANIE.201709799
Page generated: Wed Jul 9 11:47:07 2025

Last articles

Ca in 7OR1
Ca in 7ONG
Ca in 7OR0
Ca in 7OP2
Ca in 7OO7
Ca in 7OO5
Ca in 7O85
Ca in 7OIH
Ca in 7ONA
Ca in 7OMG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy