Calcium in PDB 5xts: Crystal Structure of the Cysr-CTLD3 Fragment of Human Mr at Basic/Neutral pH

The structure of Crystal Structure of the Cysr-CTLD3 Fragment of Human Mr at Basic/Neutral pH, PDB code: 5xts was solved by Y.He, Z.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.86 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.256, 101.697, 123.464, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 20.1

The binding sites of Calcium atom in the Crystal Structure of the Cysr-CTLD3 Fragment of Human Mr at Basic/Neutral pH (pdb code 5xts). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Cysr-CTLD3 Fragment of Human Mr at Basic/Neutral pH, PDB code: 5xts:

Calcium binding site 1 out of 1 in the Crystal Structure of the Cysr-CTLD3 Fragment of Human Mr at Basic/Neutral pH


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Cysr-CTLD3 Fragment of Human Mr at Basic/Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca701 b:30.7 occ:1.00 OE1 A:GLU461 2.3 32.3 1.0 O A:ASP475 2.4 27.4 1.0 OD1 A:ASP475 2.4 27.4 1.0 O A:HOH1084 2.4 42.4 1.0 OG A:SER454 2.5 30.8 1.0 O A:HOH1033 2.5 38.4 1.0 OE2 A:GLU452 2.6 31.7 1.0 OE1 A:GLU452 2.6 28.6 1.0 CD A:GLU452 3.0 29.6 1.0 H A:SER454 3.2 35.8 1.0 C A:ASP475 3.3 26.5 1.0 CD A:GLU461 3.3 33.4 1.0 H A:ASP475 3.5 32.1 1.0 CG A:ASP475 3.6 28.1 1.0 HB3 A:SER454 3.6 41.2 1.0 HB1 A:ALA474 3.6 33.4 1.0 CB A:SER454 3.6 34.4 1.0 N A:ASP475 3.8 26.7 1.0 OE2 A:GLU461 3.8 33.5 1.0 H A:HIS455 3.9 36.4 1.0 CA A:ASP475 4.0 27.3 1.0 N A:SER454 4.0 29.8 1.0 HA A:ARG476 4.1 33.7 1.0 HB3 A:GLU461 4.1 34.4 1.0 HB2 A:SER454 4.3 41.2 1.0 N A:ARG476 4.3 27.8 1.0 O A:HOH1155 4.4 46.0 1.0 CB A:ASP475 4.4 28.4 1.0 CA A:SER454 4.4 32.0 1.0 CG A:GLU452 4.5 27.9 1.0 HB3 A:ARG476 4.5 36.1 1.0 OD2 A:ASP475 4.5 29.5 1.0 CG A:GLU461 4.5 29.6 1.0 CB A:ALA474 4.5 27.8 1.0 C A:ALA474 4.6 27.1 1.0 N A:HIS455 4.6 30.3 1.0 CA A:ARG476 4.6 28.1 1.0 HA A:PRO453 4.6 33.8 1.0 HA A:ALA474 4.7 32.5 1.0 HG2 A:GLU461 4.7 35.5 1.0 CB A:GLU461 4.8 28.6 1.0 HG3 A:GLU452 4.8 33.5 1.0 CA A:ALA474 4.9 27.1 1.0 HG2 A:GLU452 4.9 33.5 1.0 HA A:ASP475 4.9 32.7 1.0 HB2 A:ASP475 4.9 34.0 1.0 HB2 A:GLU461 5.0 34.4 1.0 HB3 A:ALA474 5.0 33.4 1.0

Z.Hu, X.Shi, B.Yu, N.Li, Y.Huang, Y.He. Structural Insights Into the pH-Dependent Conformational Change and Collagen Recognition of the Human Mannose Receptor Structure V. 26 60 2018.
ISSN: ISSN 1878-4186
PubMed: 29225077
DOI: 10.1016/J.STR.2017.11.006