Calcium in PDB 5xuw: Crystal Structure of Lysozyme From Equus Asinus
Enzymatic activity of Crystal Structure of Lysozyme From Equus Asinus
All present enzymatic activity of Crystal Structure of Lysozyme From Equus Asinus:
3.2.1.17;
Protein crystallography data
The structure of Crystal Structure of Lysozyme From Equus Asinus, PDB code: 5xuw
was solved by
L.Jiang,
J.Liu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.83 /
1.76
|
Space group
|
P 32
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.543,
57.543,
73.359,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.3 /
22.1
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of Lysozyme From Equus Asinus
(pdb code 5xuw). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Crystal Structure of Lysozyme From Equus Asinus, PDB code: 5xuw:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 5xuw
Go back to
Calcium Binding Sites List in 5xuw
Calcium binding site 1 out
of 2 in the Crystal Structure of Lysozyme From Equus Asinus
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Lysozyme From Equus Asinus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:17.6
occ:1.00
|
O
|
A:LYS82
|
2.3
|
18.9
|
1.0
|
OD1
|
A:ASP85
|
2.4
|
19.8
|
1.0
|
O
|
A:HOH310
|
2.4
|
25.0
|
1.0
|
O
|
A:ASN87
|
2.4
|
15.5
|
1.0
|
O
|
A:HOH334
|
2.4
|
17.9
|
1.0
|
OD1
|
A:ASP90
|
2.4
|
18.2
|
1.0
|
OD1
|
A:ASP91
|
2.5
|
16.4
|
1.0
|
CG
|
A:ASP85
|
3.4
|
19.5
|
1.0
|
CG
|
A:ASP90
|
3.4
|
18.0
|
1.0
|
C
|
A:LYS82
|
3.5
|
19.4
|
1.0
|
C
|
A:ASN87
|
3.6
|
16.2
|
1.0
|
CG
|
A:ASP91
|
3.6
|
16.6
|
1.0
|
OD2
|
A:ASP90
|
3.7
|
19.0
|
1.0
|
OD2
|
A:ASP85
|
3.8
|
22.0
|
1.0
|
CA
|
A:LEU83
|
4.0
|
18.4
|
1.0
|
O
|
A:HOH309
|
4.1
|
20.9
|
1.0
|
CA
|
A:ILE88
|
4.2
|
15.6
|
1.0
|
OD2
|
A:ASP91
|
4.2
|
17.0
|
1.0
|
N
|
A:LEU83
|
4.2
|
18.6
|
1.0
|
N
|
A:ILE88
|
4.3
|
15.6
|
1.0
|
N
|
A:ASP91
|
4.4
|
15.6
|
1.0
|
C
|
A:LEU83
|
4.5
|
18.2
|
1.0
|
O
|
A:ASP85
|
4.5
|
16.1
|
1.0
|
N
|
A:ASP85
|
4.5
|
16.5
|
1.0
|
CA
|
A:LYS82
|
4.6
|
20.4
|
1.0
|
CA
|
A:ASN87
|
4.7
|
16.8
|
1.0
|
CB
|
A:ASP85
|
4.7
|
18.1
|
1.0
|
N
|
A:ASN87
|
4.7
|
16.6
|
1.0
|
C
|
A:ILE88
|
4.8
|
15.9
|
1.0
|
C
|
A:ASP85
|
4.8
|
16.5
|
1.0
|
CB
|
A:ASP90
|
4.8
|
17.4
|
1.0
|
N
|
A:LEU84
|
4.8
|
17.5
|
1.0
|
CB
|
A:ASP91
|
4.8
|
15.5
|
1.0
|
N
|
A:ASP90
|
4.9
|
16.7
|
1.0
|
CD2
|
A:LEU83
|
4.9
|
19.7
|
1.0
|
CA
|
A:ASP85
|
4.9
|
17.0
|
1.0
|
|
Calcium binding site 2 out
of 2 in 5xuw
Go back to
Calcium Binding Sites List in 5xuw
Calcium binding site 2 out
of 2 in the Crystal Structure of Lysozyme From Equus Asinus
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Lysozyme From Equus Asinus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca201
b:17.4
occ:1.00
|
OD2
|
B:ASP85
|
2.3
|
20.1
|
1.0
|
O
|
B:LYS82
|
2.4
|
20.3
|
1.0
|
O
|
B:ASN87
|
2.4
|
16.1
|
1.0
|
O
|
B:HOH332
|
2.4
|
16.5
|
1.0
|
O
|
B:HOH311
|
2.4
|
21.4
|
1.0
|
OD1
|
B:ASP90
|
2.4
|
19.3
|
1.0
|
OD1
|
B:ASP91
|
2.5
|
16.5
|
1.0
|
CG
|
B:ASP90
|
3.4
|
19.0
|
1.0
|
CG
|
B:ASP85
|
3.4
|
20.1
|
1.0
|
C
|
B:LYS82
|
3.5
|
20.1
|
1.0
|
C
|
B:ASN87
|
3.6
|
16.3
|
1.0
|
CG
|
B:ASP91
|
3.6
|
17.0
|
1.0
|
OD2
|
B:ASP90
|
3.7
|
20.6
|
1.0
|
OD1
|
B:ASP85
|
3.8
|
22.4
|
1.0
|
CA
|
B:LEU83
|
4.0
|
18.1
|
1.0
|
O
|
B:HOH309
|
4.1
|
19.7
|
1.0
|
CA
|
B:ILE88
|
4.1
|
15.6
|
1.0
|
OD2
|
B:ASP91
|
4.2
|
17.5
|
1.0
|
N
|
B:LEU83
|
4.2
|
18.8
|
1.0
|
N
|
B:ILE88
|
4.3
|
15.6
|
1.0
|
N
|
B:ASP91
|
4.4
|
15.6
|
1.0
|
O
|
B:ASP85
|
4.5
|
16.5
|
1.0
|
C
|
B:LEU83
|
4.5
|
18.0
|
1.0
|
N
|
B:ASP85
|
4.6
|
17.0
|
1.0
|
CA
|
B:LYS82
|
4.6
|
21.1
|
1.0
|
CA
|
B:ASN87
|
4.7
|
16.5
|
1.0
|
CB
|
B:ASP85
|
4.7
|
18.9
|
1.0
|
N
|
B:ASN87
|
4.7
|
16.7
|
1.0
|
C
|
B:ILE88
|
4.8
|
16.2
|
1.0
|
C
|
B:ASP85
|
4.8
|
17.0
|
1.0
|
CB
|
B:ASP90
|
4.8
|
18.0
|
1.0
|
CB
|
B:ASP91
|
4.8
|
15.7
|
1.0
|
N
|
B:LEU84
|
4.8
|
17.5
|
1.0
|
CD2
|
B:LEU83
|
4.9
|
19.3
|
1.0
|
N
|
B:ASP90
|
4.9
|
16.3
|
1.0
|
CA
|
B:ASP85
|
4.9
|
17.9
|
1.0
|
|
Reference:
L.Jiang,
J.Liu.
Crystal Structure of Lysozyme From Equus Asinus To Be Published.
Page generated: Sat Dec 12 05:53:01 2020
|