Atomistry » Calcium » PDB 5xu9-5yhr » 5ygg
Atomistry »
  Calcium »
    PDB 5xu9-5yhr »
      5ygg »

Calcium in PDB 5ygg: Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form

Enzymatic activity of Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form

All present enzymatic activity of Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form:
2.7.1.4;

Protein crystallography data

The structure of Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form, PDB code: 5ygg was solved by S.Chatterjee, R.Paul, S.Nath, U.Sen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.06 / 1.67
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.760, 64.330, 116.400, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 19.5

Other elements in 5ygg:

The structure of Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form also contains other interesting chemical elements:

Potassium (K) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form (pdb code 5ygg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form, PDB code: 5ygg:

Calcium binding site 1 out of 1 in 5ygg

Go back to Calcium Binding Sites List in 5ygg
Calcium binding site 1 out of 1 in the Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca603

b:78.8
occ:1.00
 OD1 A:ASN174 2.5 16.0 1.0
O A:HOH892 2.6 26.8 1.0
O A:HOH758 2.6 14.2 1.0
O2B A:ADP601 2.8 0.0 1.0
O A:HOH753 2.8 20.4 1.0
CG A:ASN174 3.3 17.1 1.0
NZ A:LYS201 3.6 14.4 1.0
ND2 A:ASN174 3.8 18.6 1.0
O A:HOH857 4.0 24.8 1.0
PB A:ADP601 4.0 0.4 1.0
O A:HOH716 4.1 24.5 1.0
O3B A:ADP601 4.3 0.1 1.0
NH2 A:ARG176 4.3 15.4 1.0
CA A:ASN174 4.4 10.6 1.0
CB A:ASN174 4.4 15.2 1.0
NH1 A:ARG176 4.5 13.1 1.0
OD2 A:ASP172 4.5 13.9 1.0
O6 A:FRU602 4.5 18.6 1.0
CA A:GLY265 4.6 10.1 1.0
O1B A:ADP601 4.6 0.1 1.0
OD1 A:ASP172 4.7 10.7 1.0
OE1 A:GLU206 4.7 21.3 1.0
OD1 A:ASP266 4.8 13.5 1.0
CZ A:ARG176 4.9 17.7 1.0
OE2 A:GLU206 5.0 20.1 1.0

Reference:

S.Chatterjee, R.Paul, S.Nath, U.Sen. Crystal Structure of Fructokinase Double-Mutant (T261C-H108C) From Vibrio Cholerae O395 in Fructose, Adp and Potassium Ion Bound Form To Be Published.
Page generated: Mon Jul 15 15:21:23 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy