Calcium in PDB 5yvk: Crystal Structure of A Cyclase FAMC1 From Fischerella Ambigua Utex 1903

The structure of Crystal Structure of A Cyclase FAMC1 From Fischerella Ambigua Utex 1903, PDB code: 5yvk was solved by X.Y.Hu, W.D.Liu, C.C.Chen, R.T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.14 / 1.29
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	54.845, 54.845, 152.562, 90.00, 90.00, 120.00
R / Rfree (%)	16.6 / 18.7

The binding sites of Calcium atom in the Crystal Structure of A Cyclase FAMC1 From Fischerella Ambigua Utex 1903 (pdb code 5yvk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Cyclase FAMC1 From Fischerella Ambigua Utex 1903, PDB code: 5yvk:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of A Cyclase FAMC1 From Fischerella Ambigua Utex 1903


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Cyclase FAMC1 From Fischerella Ambigua Utex 1903 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:61.6 occ:1.00 O A:PHE147 2.2 17.4 1.0 OD1 A:ASN137 2.2 17.6 1.0 O A:LEU138 2.2 18.2 1.0 O A:HOH480 2.3 23.1 1.0 O A:GLY149 2.4 30.4 1.0 OE1 A:GLU175 2.5 24.1 1.0 OE2 A:GLU175 2.7 22.4 1.0 CD A:GLU175 3.0 20.1 1.0 CG A:ASN137 3.4 15.5 1.0 C A:LEU138 3.5 16.1 1.0 C A:PHE147 3.5 15.7 1.0 C A:GLY149 3.5 20.0 1.0 N A:GLY149 3.7 17.4 1.0 C A:ALA148 3.9 16.5 1.0 ND2 A:ASN137 4.0 16.7 1.0 N A:LEU138 4.1 15.5 1.0 CA A:ALA148 4.2 17.1 1.0 CA A:GLY149 4.2 18.9 1.0 C A:ASN137 4.2 15.3 1.0 N A:ALA148 4.3 16.4 1.0 CA A:LEU138 4.3 16.0 1.0 N A:ALA139 4.4 17.2 1.0 CG A:GLU175 4.4 21.1 1.0 CA A:PHE147 4.5 15.8 1.0 O A:ASN137 4.5 16.8 1.0 N A:PHE150 4.5 18.4 1.0 O A:ALA148 4.6 18.2 1.0 CA A:ALA139 4.6 17.4 1.0 CB A:PHE147 4.6 16.1 1.0 CB A:ASN137 4.6 16.0 1.0 CA A:PHE150 4.7 16.8 1.0 CA A:ASN137 4.7 14.1 1.0 O A:HOH420 4.8 18.8 1.0 CB A:LEU138 4.9 19.7 1.0 CB A:PHE210 4.9 18.5 1.0 CD2 A:PHE210 4.9 17.9 1.0 CB A:PHE150 4.9 16.2 1.0 O A:HOH486 4.9 21.0 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of A Cyclase FAMC1 From Fischerella Ambigua Utex 1903


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Cyclase FAMC1 From Fischerella Ambigua Utex 1903 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:16.9 occ:1.00 OE1 A:GLU95 2.3 17.1 1.0 O A:ASN98 2.3 14.7 1.0 O A:GLU95 2.3 16.9 1.0 OE2 A:GLU39 2.4 16.2 1.0 OD1 A:ASP216 2.4 16.8 1.0 O A:GLY37 2.4 14.8 1.0 OD2 A:ASP216 2.7 17.7 1.0 CG A:ASP216 2.9 16.3 1.0 C A:GLU95 3.4 16.1 1.0 C A:GLY37 3.4 14.5 1.0 C A:ASN98 3.4 15.5 1.0 CD A:GLU95 3.4 20.8 1.0 CD A:GLU39 3.5 15.5 1.0 CA A:GLY37 3.7 15.5 1.0 CB A:GLU95 3.9 26.7 1.0 N A:ASN98 4.0 15.7 1.0 CG A:GLU39 4.0 16.2 1.0 CA A:GLU95 4.1 19.8 1.0 CA A:ASN98 4.2 16.4 1.0 CG A:GLU95 4.3 29.2 1.0 N A:GLY96 4.3 18.0 1.0 N A:GLU95 4.3 19.2 1.0 CB A:ASP216 4.4 14.9 1.0 CA A:GLY96 4.4 17.5 1.0 OE2 A:GLU95 4.4 25.4 1.0 OE1 A:GLU39 4.5 17.0 1.0 N A:ILE99 4.5 18.3 1.0 C A:GLY96 4.6 17.2 1.0 N A:ARG97 4.6 16.8 1.0 N A:PHE38 4.6 14.1 1.0 CB A:ASN98 4.7 22.6 1.0 CB A:ALA93 4.7 18.6 1.0 CA A:ILE99 4.8 15.8 1.0 N A:GLU39 4.9 14.5 1.0 N A:ASN217 4.9 14.6 1.0 C A:ARG97 4.9 16.0 1.0 C A:PHE38 5.0 16.2 1.0

C.C.Chen, X.Hu, X.Tang, Y.Yang, T.P.Ko, J.Gao, Y.Zheng, J.W.Huang, Z.Yu, L.Li, S.Han, N.Cai, Y.Zhang, W.Liu, R.T.Guo. The Crystal Structure of A Class of Cyclases That Catalyze the Cope Rearrangement Angew. Chem. Int. Ed. Engl. V. 57 15060 2018.
ISSN: ESSN 1521-3773
PubMed: 30222239
DOI: 10.1002/ANIE.201808231