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Calcium in PDB 5zgs: Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity

Enzymatic activity of Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity

All present enzymatic activity of Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity, PDB code: 5zgs was solved by P.K.Singh, R.P.Singh, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.26 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.924, 79.717, 77.005, 90.00, 102.22, 90.00
R / Rfree (%) 17.6 / 24.6

Other elements in 5zgs:

The structure of Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity also contains other interesting chemical elements:

Iodine (I) 11 atoms
Iron (Fe) 1 atom
Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity (pdb code 5zgs). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity, PDB code: 5zgs:

Calcium binding site 1 out of 1 in 5zgs

Go back to Calcium Binding Sites List in 5zgs
Calcium binding site 1 out of 1 in the Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca607

b:22.6
occ:1.00
O A:ASP110 2.3 19.5 1.0
OD1 A:ASP110 2.3 25.7 1.0
O A:PHE186 2.4 26.1 1.0
OG1 A:THR184 2.4 23.2 1.0
OD1 A:ASP188 2.4 24.9 1.0
O A:THR184 2.5 19.8 1.0
OG A:SER190 2.5 24.6 1.0
C A:ASP110 3.3 20.3 1.0
C A:THR184 3.4 20.4 1.0
CG A:ASP188 3.4 28.7 1.0
CG A:ASP110 3.5 25.7 1.0
CB A:SER190 3.6 27.1 1.0
C A:PHE186 3.6 27.1 1.0
CB A:THR184 3.6 22.1 1.0
OD2 A:ASP188 3.8 27.0 1.0
CA A:THR184 3.9 21.2 1.0
N A:ASP188 4.0 29.6 1.0
CA A:ASP110 4.1 21.4 1.0
N A:THR184 4.1 20.8 1.0
N A:PHE186 4.1 23.3 1.0
N A:LEU111 4.2 21.2 1.0
CB A:ASP110 4.3 20.9 1.0
N A:SER190 4.3 25.0 1.0
CA A:LEU111 4.3 20.7 1.0
OD2 A:ASP110 4.4 27.5 1.0
N A:SER185 4.4 20.7 1.0
C A:SER185 4.5 22.0 1.0
CA A:PHE186 4.5 24.4 1.0
CA A:SER190 4.5 26.0 1.0
N A:LEU187 4.5 24.4 1.0
CB A:ASP188 4.6 28.1 1.0
CA A:LEU187 4.6 26.7 1.0
O A:HOH932 4.7 15.8 1.0
CA A:ASP188 4.7 27.7 1.0
CD2 A:LEU111 4.7 18.5 1.0
CG2 A:THR184 4.8 22.3 1.0
CA A:SER185 4.8 22.7 1.0
C A:LEU187 4.8 29.7 1.0

Reference:

P.K.Singh, R.P.Singh, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of Bovine Lactoperoxidase with Multiple Scn and Oscn Ions in the Distal Heme Cavity To Be Published.
Page generated: Sat Dec 12 05:55:57 2020

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