Calcium in PDB 5zza: Odinprofilin/Rabbit Actin Complex

The structure of Odinprofilin/Rabbit Actin Complex, PDB code: 5zza was solved by R.C.Robinson, C.Akil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.78 / 1.53
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.079, 70.669, 77.717, 90.00, 101.13, 90.00
R / Rfree (%)	15 / 17.9

The binding sites of Calcium atom in the Odinprofilin/Rabbit Actin Complex (pdb code 5zza). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Odinprofilin/Rabbit Actin Complex, PDB code: 5zza:

Calcium binding site 1 out of 1 in the Odinprofilin/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Odinprofilin/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca403 b:13.0 occ:1.00 O1B A:ATP402 2.3 12.2 1.0 O1G A:ATP402 2.4 12.4 1.0 O A:HOH627 2.4 12.8 1.0 O A:HOH693 2.4 16.2 1.0 O A:HOH568 2.4 14.0 1.0 O A:HOH634 2.4 15.4 1.0 O A:HOH622 2.6 14.3 1.0 PG A:ATP402 3.5 12.2 1.0 PB A:ATP402 3.6 12.5 1.0 O3B A:ATP402 3.9 12.2 1.0 O3G A:ATP402 3.9 12.0 1.0 OE1 A:GLN137 4.1 13.4 1.0 O A:HOH606 4.2 21.5 1.0 O A:HOH525 4.2 30.3 1.0 O A:HOH616 4.3 16.4 1.0 O3A A:ATP402 4.3 12.9 1.0 CA A:GLY13 4.3 13.2 1.0 NZ A:LYS18 4.3 14.1 1.0 O A:HOH533 4.4 19.7 1.0 O1A A:ATP402 4.4 13.5 1.0 CD A:GLN137 4.5 12.0 1.0 OD1 A:ASP11 4.7 12.9 1.0 OD2 A:ASP11 4.7 13.2 1.0 O2G A:ATP402 4.8 12.8 1.0 PA A:ATP402 4.8 13.8 1.0 OD2 A:ASP154 4.8 16.9 1.0 O2B A:ATP402 4.8 12.8 1.0 CG A:GLN137 4.9 12.1 1.0 NE2 A:GLN137 5.0 12.3 1.0

C.Akil, R.C.Robinson. Genomes of Asgard Archaea Encode Profilins That Regulate Actin. Nature V. 562 439 2018.
ISSN: ESSN 1476-4687
PubMed: 30283132
DOI: 10.1038/S41586-018-0548-6