Calcium in PDB 5zzb: LOKIPROFILIN2/Rabbit Actin Complex

The structure of LOKIPROFILIN2/Rabbit Actin Complex, PDB code: 5zzb was solved by R.C.Robinson, C.Akil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.65 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.850, 123.300, 88.240, 90.00, 96.90, 90.00
R / Rfree (%)	22.8 / 27.4

The binding sites of Calcium atom in the LOKIPROFILIN2/Rabbit Actin Complex (pdb code 5zzb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the LOKIPROFILIN2/Rabbit Actin Complex, PDB code: 5zzb:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the LOKIPROFILIN2/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of LOKIPROFILIN2/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca403 b:19.7 occ:1.00 O1B B:ATP402 2.3 19.9 1.0 O3G B:ATP402 2.3 19.7 1.0 O B:HOH595 2.3 19.3 1.0 O B:HOH532 2.4 18.2 1.0 O B:HOH587 2.4 18.8 1.0 O B:HOH517 2.5 17.9 1.0 O B:HOH530 2.8 31.1 1.0 PG B:ATP402 3.5 20.5 1.0 PB B:ATP402 3.6 20.8 1.0 O1G B:ATP402 3.9 20.2 1.0 O3B B:ATP402 3.9 21.0 1.0 O B:HOH510 4.1 28.6 1.0 OE1 B:GLN137 4.1 18.0 1.0 O3A B:ATP402 4.3 21.6 1.0 CA B:GLY13 4.3 19.9 1.0 O B:HOH583 4.3 22.8 1.0 CD B:GLN137 4.3 17.8 1.0 NZ B:LYS18 4.4 19.7 1.0 O2A B:ATP402 4.4 21.5 1.0 O B:HOH508 4.5 26.2 1.0 OD1 B:ASP11 4.6 18.4 1.0 OD2 B:ASP11 4.7 18.8 1.0 NE2 B:GLN137 4.7 17.9 1.0 O2G B:ATP402 4.8 21.3 1.0 PA B:ATP402 4.8 21.9 1.0 O2B B:ATP402 4.9 21.4 1.0 CG B:GLN137 4.9 17.5 1.0 OD2 B:ASP154 4.9 18.7 1.0 N B:GLY13 5.0 19.6 1.0

Calcium binding site 2 out of 2 in the LOKIPROFILIN2/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of LOKIPROFILIN2/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca403 b:20.5 occ:1.00 O2B D:ATP402 2.3 15.6 1.0 O1G D:ATP402 2.3 15.5 1.0 O D:HOH625 2.4 19.9 1.0 O D:HOH597 2.4 14.0 1.0 O D:HOH543 2.4 9.7 1.0 O D:HOH541 2.5 19.6 1.0 O D:HOH523 3.0 17.5 1.0 PG D:ATP402 3.5 15.9 1.0 PB D:ATP402 3.6 16.0 1.0 O3G D:ATP402 3.8 16.1 1.0 O3B D:ATP402 3.9 16.1 1.0 OE1 D:GLN137 3.9 15.8 1.0 O D:HOH539 4.1 16.9 1.0 O3A D:ATP402 4.3 16.3 1.0 CA D:GLY13 4.3 16.2 1.0 O1A D:ATP402 4.4 16.2 1.0 O D:HOH563 4.4 20.7 1.0 NZ D:LYS18 4.4 15.8 1.0 CD D:GLN137 4.4 15.9 1.0 OD1 D:ASP11 4.6 15.6 1.0 OD2 D:ASP11 4.8 15.6 1.0 O2G D:ATP402 4.8 16.3 1.0 PA D:ATP402 4.8 16.4 1.0 OD2 D:ASP154 4.8 15.2 1.0 O1B D:ATP402 4.8 16.4 1.0

C.Akil, R.C.Robinson. Genomes of Asgard Archaea Encode Profilins That Regulate Actin. Nature V. 562 439 2018.
ISSN: ESSN 1476-4687
PubMed: 30283132
DOI: 10.1038/S41586-018-0548-6