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Calcium in PDB 6aja: Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+
Enzymatic activity of Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+
All present enzymatic activity of Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+:
1.1.1.42;
1.1.1.42;
Protein crystallography data
The structure of Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+, PDB code: 6aja
was solved by
X.Wang,
D.K.Inaoka,
T.Shiba,
E.O.Balogun,
N.Ziebart,
S.Allman,
Y.Watanabe,
T.Nozaki,
M.Boshart,
F.Bringaud,
S.Harada,
K.Kita,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.93 / 2.85 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 120.894, 70.455, 122.052, 90.00, 113.39, 90.00 |
| R / Rfree (%) | 19.8 / 28.8 |
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+
(pdb code 6aja). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+, PDB code: 6aja:
Jump to Calcium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Calcium where determined in the Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+, PDB code: 6aja:
Jump to Calcium binding site number: 1; 2; 3; 4;
Calcium binding site 1 out of 4 in 6aja
Go back to
Calcium Binding Sites List in 6aja
Calcium binding site 1 out
of 4 in the Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+ within 5.0Å range:
|
Calcium binding site 2 out of 4 in 6aja
Go back to
Calcium Binding Sites List in 6aja
Calcium binding site 2 out
of 4 in the Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+ within 5.0Å range:
|
Calcium binding site 3 out of 4 in 6aja
Go back to
Calcium Binding Sites List in 6aja
Calcium binding site 3 out
of 4 in the Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+ within 5.0Å range:
|
Calcium binding site 4 out of 4 in 6aja
Go back to
Calcium Binding Sites List in 6aja
Calcium binding site 4 out
of 4 in the Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase in Complex with Nadph, Alpha-Ketoglutarate and CA2+ within 5.0Å range:
|
Reference:
X.Wang,
D.K.Inaoka,
T.Shiba,
E.O.Balogun,
N.Ziebart,
S.Allman,
Y.Watanabe,
T.Nozaki,
M.Boshart,
F.Bringaud,
S.Harada,
K.Kita.
Biochemical Characterization of A Novel Trypanosoma Brucei Glycosomal Isocitrate Dehydrogenase with Dual Coenzyme Specificity (Nadp+/Nad+) To Be Published.
Page generated: Wed Jul 9 12:28:39 2025
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