Atomistry » Calcium » PDB 6ai0-6b40 » 6aon
Atomistry »
  Calcium »
    PDB 6ai0-6b40 »
      6aon »

Calcium in PDB 6aon: 1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase From Bordetella Pertussis in Complex with Fad

Enzymatic activity of 1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase From Bordetella Pertussis in Complex with Fad

All present enzymatic activity of 1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase From Bordetella Pertussis in Complex with Fad:
1.8.1.4;

Protein crystallography data

The structure of 1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase From Bordetella Pertussis in Complex with Fad, PDB code: 6aon was solved by G.Minasov, Z.Wawrzak, T.Skarina, C.Mcchesney, S.Grimshaw, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.92 / 1.72
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 68.801, 68.801, 199.396, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 20.5

Calcium Binding Sites:

The binding sites of Calcium atom in the 1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase From Bordetella Pertussis in Complex with Fad (pdb code 6aon). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the 1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase From Bordetella Pertussis in Complex with Fad, PDB code: 6aon:

Calcium binding site 1 out of 1 in 6aon

Go back to Calcium Binding Sites List in 6aon
Calcium binding site 1 out of 1 in the 1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase From Bordetella Pertussis in Complex with Fad


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of 1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase From Bordetella Pertussis in Complex with Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:59.5
occ:0.50
 O A:HOH725 2.2 47.1 1.0
O A:ALA222 2.3 24.5 1.0
O A:HOH605 2.4 39.9 1.0
O A:HOH818 2.4 28.9 1.0
O A:ALA220 2.6 28.0 1.0
CG A:GLN224 3.3 29.4 0.5
OE1 A:GLN374 3.5 46.8 1.0
C A:ALA220 3.6 27.2 1.0
C A:ALA222 3.6 24.4 1.0
O A:HOH726 3.6 36.0 1.0
CG A:GLN224 3.7 31.1 0.5
N A:GLN224 3.9 26.7 0.5
N A:GLN224 3.9 26.9 0.5
CA A:ALA220 4.1 27.2 1.0
O A:HOH612 4.1 25.6 0.3
C A:ASP223 4.2 25.3 1.0
O A:LEU219 4.2 24.4 1.0
NE2 A:GLN224 4.2 31.7 0.5
N A:ALA222 4.2 23.9 1.0
CA A:GLN224 4.2 27.2 0.5
CA A:GLN224 4.3 27.6 0.5
OE1 A:GLU217 4.3 44.9 1.0
CD A:GLN224 4.3 31.6 0.5
CB A:GLN224 4.3 29.2 0.5
O A:HOH979 4.4 17.7 1.0
N A:ASP223 4.5 24.3 1.0
C A:ALA221 4.5 25.7 1.0
CA A:ASP223 4.5 25.7 1.0
CA A:ALA222 4.5 23.7 1.0
N A:ALA221 4.6 25.8 1.0
CB A:GLN224 4.6 30.1 0.5
CD A:GLN374 4.7 46.4 1.0
O A:ASP223 4.8 23.9 1.0
CD A:GLN224 4.8 34.0 0.5
O A:ALA221 4.9 28.1 1.0
OE1 A:GLN224 4.9 35.5 0.5
CA A:ALA221 4.9 26.5 1.0

Reference:

G.Minasov, Z.Wawrzak, T.Skarina, C.Mcchesney, S.Grimshaw, A.Savchenko, W.F.Anderson. 1.72 Angstrom Resolution Crystal Structure of 2-Oxoglutarate Dehydrogenase Complex Subunit Dihydrolipoamide Dehydrogenase From Bordetella Pertussis in Complex with Fad To Be Published.
Page generated: Mon Jul 15 16:34:59 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy