Calcium in PDB 6bmt: Crystal Structure of A Recombinant Form of Human Myeloperoxidase Bound to An Inhibitor From Staphylococcus Delphini

Enzymatic activity of Crystal Structure of A Recombinant Form of Human Myeloperoxidase Bound to An Inhibitor From Staphylococcus Delphini

All present enzymatic activity of Crystal Structure of A Recombinant Form of Human Myeloperoxidase Bound to An Inhibitor From Staphylococcus Delphini:
1.11.2.2;

Protein crystallography data

The structure of Crystal Structure of A Recombinant Form of Human Myeloperoxidase Bound to An Inhibitor From Staphylococcus Delphini, PDB code: 6bmt was solved by N.T.Ploscariu, B.V.Geisbrecht, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.34 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.626, 90.674, 125.661, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.8

Other elements in 6bmt:

The structure of Crystal Structure of A Recombinant Form of Human Myeloperoxidase Bound to An Inhibitor From Staphylococcus Delphini also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Recombinant Form of Human Myeloperoxidase Bound to An Inhibitor From Staphylococcus Delphini (pdb code 6bmt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Recombinant Form of Human Myeloperoxidase Bound to An Inhibitor From Staphylococcus Delphini, PDB code: 6bmt:

Calcium binding site 1 out of 1 in 6bmt

Go back to Calcium Binding Sites List in 6bmt
Calcium binding site 1 out of 1 in the Crystal Structure of A Recombinant Form of Human Myeloperoxidase Bound to An Inhibitor From Staphylococcus Delphini


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Recombinant Form of Human Myeloperoxidase Bound to An Inhibitor From Staphylococcus Delphini within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca801

b:45.3
occ:1.00
 OD1 A:ASP262 2.3 49.8 1.0
O A:PHE336 2.3 44.0 1.0
OG1 A:THR334 2.3 41.5 1.0
O A:ASP262 2.4 43.4 1.0
OG A:SER340 2.4 45.6 1.0
O A:THR334 2.4 43.8 1.0
OD1 A:ASP338 2.5 42.4 1.0
C A:THR334 3.3 42.5 1.0
CG A:ASP338 3.4 44.1 1.0
CB A:SER340 3.4 41.7 1.0
C A:ASP262 3.4 45.4 1.0
CG A:ASP262 3.5 50.2 1.0
C A:PHE336 3.5 43.3 1.0
CB A:THR334 3.6 41.6 1.0
OD2 A:ASP338 3.8 41.0 1.0
CA A:THR334 3.9 40.4 1.0
N A:PHE336 4.0 44.2 1.0
CA A:ASP262 4.1 43.0 1.0
C A:SER335 4.1 45.1 1.0
N A:ASP338 4.2 46.1 1.0
N A:SER335 4.3 40.9 1.0
N A:SER340 4.3 41.2 1.0
CA A:PHE336 4.3 43.2 1.0
CB A:ASP262 4.3 43.2 1.0
N A:THR334 4.4 37.6 1.0
OD2 A:ASP262 4.4 52.6 1.0
O A:SER335 4.4 44.5 1.0
CA A:SER340 4.5 40.4 1.0
N A:LEU263 4.5 42.8 1.0
N A:VAL337 4.5 43.0 1.0
CA A:SER335 4.5 42.8 1.0
CB A:ASP338 4.6 44.0 1.0
O A:HOH959 4.6 41.9 1.0
CA A:LEU263 4.6 43.8 1.0
CG2 A:THR334 4.7 40.7 1.0
CA A:VAL337 4.7 46.4 1.0
CA A:ASP338 4.9 42.6 1.0
CB A:PHE336 4.9 44.9 1.0
CD2 A:LEU263 5.0 45.2 1.0
C A:VAL337 5.0 45.9 1.0

Reference:

N.T.Ploscariu, N.W.M.De Jong, K.P.M.Van Kessel, J.A.G.Van Strijp, B.V.Geisbrecht. Identification and Structural Characterization of A Novel Myeloperoxidase Inhibitor From Staphylococcus Delphini. Arch. Biochem. Biophys. V. 645 1 2018.
ISSN: ESSN 1096-0384
PubMed: 29524428
DOI: 10.1016/J.ABB.2018.03.007
Page generated: Sat Dec 12 05:59:18 2020

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