Calcium in PDB 6bn2: Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1

Enzymatic activity of Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1

All present enzymatic activity of Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1:
2.3.1.9;

Protein crystallography data

The structure of Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1, PDB code: 6bn2 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.94 / 1.65
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 99.170, 167.420, 72.560, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 15.6

Other elements in 6bn2:

The structure of Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1 (pdb code 6bn2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1, PDB code: 6bn2:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 6bn2

Go back to Calcium Binding Sites List in 6bn2
Calcium binding site 1 out of 3 in the Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:40.6
occ:0.67
O A:HOH507 2.3 44.4 1.0
O A:ALA246 2.5 30.2 1.0
OH A:TYR182 2.8 33.7 1.0
O A:ALA244 3.0 22.1 1.0
O A:ALA243 3.1 26.5 1.0
O A:HOH811 3.1 54.1 1.0
O A:VAL344 3.1 23.6 1.0
C A:ALA244 3.5 23.6 1.0
O A:HOH527 3.6 42.6 1.0
CA A:ALA244 3.7 23.4 1.0
C A:ALA246 3.7 24.2 1.0
O A:HOH638 3.9 37.8 1.0
CG2 A:THR248 4.0 26.0 1.0
CZ A:TYR182 4.0 28.3 1.0
C A:ALA243 4.1 26.3 1.0
CG1 A:VAL344 4.2 24.0 1.0
C A:VAL344 4.2 22.7 1.0
CA A:SER247 4.3 23.6 0.4
CA A:SER247 4.4 23.4 0.6
N A:ALA244 4.4 24.1 1.0
N A:ASN245 4.4 21.3 1.0
C A:SER247 4.4 25.4 1.0
O A:HOH662 4.4 30.6 1.0
N A:ALA246 4.5 19.7 1.0
N A:SER247 4.5 21.8 1.0
CE2 A:TYR182 4.6 27.2 1.0
O A:HOH814 4.6 51.6 1.0
CA A:VAL344 4.6 16.7 1.0
N A:THR248 4.7 21.4 1.0
CA A:ALA246 4.8 21.2 1.0
O A:SER247 4.8 28.5 1.0
C A:ASN245 4.9 18.5 1.0
CA A:ASN245 4.9 18.5 1.0
CB A:ALA244 4.9 22.2 1.0
CB A:VAL344 5.0 19.8 1.0

Calcium binding site 2 out of 3 in 6bn2

Go back to Calcium Binding Sites List in 6bn2
Calcium binding site 2 out of 3 in the Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:19.8
occ:0.30
O A:GLY331 2.3 25.7 1.0
O A:HOH828 2.4 39.3 1.0
O A:HOH576 2.5 37.8 0.5
O A:HOH676 2.6 47.0 1.0
C A:GLY331 3.4 24.5 1.0
CA A:GLY331 4.0 18.4 1.0
O A:HOH840 4.3 53.6 1.0
N A:LEU332 4.4 21.0 1.0
O A:LEU330 4.6 21.9 1.0
CA A:LEU332 4.7 22.8 1.0
O A:HOH833 4.8 34.6 1.0

Calcium binding site 3 out of 3 in 6bn2

Go back to Calcium Binding Sites List in 6bn2
Calcium binding site 3 out of 3 in the Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:15.9
occ:0.30
O A:HOH841 2.4 31.4 1.0
O A:HOH773 2.4 27.5 0.5
O A:HOH876 2.4 39.6 1.0
O A:HOH685 2.5 40.4 1.0
O A:TRP189 4.5 18.7 1.0
OE1 A:GLU215 4.5 34.9 1.0
OE2 A:GLU215 4.6 32.4 1.0
CA A:SER190 4.6 18.9 1.0
O A:HOH526 4.6 39.5 1.0
O A:HOH544 4.8 23.8 1.0
O A:HOH678 4.8 27.9 1.0
C A:TRP189 4.9 19.4 1.0
CD A:GLU215 5.0 31.7 1.0

Reference:

J.Abendroth, D.Fox Iii, D.D.Lorimer, T.E.Edwards. Crystal Structure of Acetyl-Coa Acetyltransferase From Elizabethkingia Anophelis NUHP1 To Be Published.
Page generated: Sat Dec 12 05:59:18 2020

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