Calcium in PDB 6bsj: Structure of Hiv-1 Rt Complexed with An Rna/Dna Hybrid Sequence Non- Preferred For Rna Hydrolysis

Protein crystallography data

The structure of Structure of Hiv-1 Rt Complexed with An Rna/Dna Hybrid Sequence Non- Preferred For Rna Hydrolysis, PDB code: 6bsj was solved by L.Tian, M.Kim, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.20 / 2.89
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 163.240, 163.240, 129.400, 90.00, 90.00, 120.00
R / Rfree (%) 20.1 / 25.1

Other elements in 6bsj:

The structure of Structure of Hiv-1 Rt Complexed with An Rna/Dna Hybrid Sequence Non- Preferred For Rna Hydrolysis also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Hiv-1 Rt Complexed with An Rna/Dna Hybrid Sequence Non- Preferred For Rna Hydrolysis (pdb code 6bsj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Hiv-1 Rt Complexed with An Rna/Dna Hybrid Sequence Non- Preferred For Rna Hydrolysis, PDB code: 6bsj:

Calcium binding site 1 out of 1 in 6bsj

Go back to Calcium Binding Sites List in 6bsj
Calcium binding site 1 out of 1 in the Structure of Hiv-1 Rt Complexed with An Rna/Dna Hybrid Sequence Non- Preferred For Rna Hydrolysis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Hiv-1 Rt Complexed with An Rna/Dna Hybrid Sequence Non- Preferred For Rna Hydrolysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca602

b:0.2
occ:1.00
OE2 A:GLU478 2.3 0.7 1.0
OD1 A:ASP443 2.7 93.8 1.0
OD1 A:ASP498 3.0 93.9 1.0
OD2 A:ASP498 3.2 91.6 1.0
O A:GLY444 3.4 94.9 1.0
CD A:GLU478 3.4 1.0 1.0
CG A:ASP498 3.5 91.6 1.0
CG A:ASP443 3.7 94.2 1.0
OD2 A:ASP443 4.0 99.8 1.0
OE1 A:GLU478 4.0 99.3 1.0
OP1 R:A25 4.1 0.8 1.0
ND2 A:ASN474 4.3 0.1 1.0
NH2 A:ARG557 4.5 0.7 1.0
C A:GLY444 4.6 93.7 1.0
CG A:GLU478 4.6 0.8 1.0
N A:GLY444 4.6 90.1 1.0
CB A:ASP498 5.0 78.8 1.0

Reference:

L.Tian, M.S.Kim, H.Li, J.Wang, W.Yang. Structure of Hiv-1 Reverse Transcriptase Cleaving Rna in An Rna/Dna Hybrid. Proc. Natl. Acad. Sci. V. 115 507 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29295939
DOI: 10.1073/PNAS.1719746115
Page generated: Sat Dec 12 06:00:05 2020

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