Calcium in PDB 6bwn: Crystal Structure of Mouse Protocadherin-15 EC6-7
Protein crystallography data
The structure of Crystal Structure of Mouse Protocadherin-15 EC6-7, PDB code: 6bwn
was solved by
B.L.Neel,
C.F.Klanseck,
M.Sotomayor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
96.11 /
2.94
|
Space group
|
P 62 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
110.981,
110.981,
206.024,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
21.7 /
24.2
|
Other elements in 6bwn:
The structure of Crystal Structure of Mouse Protocadherin-15 EC6-7 also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of Mouse Protocadherin-15 EC6-7
(pdb code 6bwn). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Crystal Structure of Mouse Protocadherin-15 EC6-7, PDB code: 6bwn:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 6bwn
Go back to
Calcium Binding Sites List in 6bwn
Calcium binding site 1 out
of 2 in the Crystal Structure of Mouse Protocadherin-15 EC6-7
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Mouse Protocadherin-15 EC6-7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca901
b:78.8
occ:1.00
|
OD1
|
A:ASP724
|
2.3
|
86.8
|
1.0
|
OE1
|
A:GLU606
|
2.4
|
95.8
|
1.0
|
OD1
|
A:ASP688
|
2.5
|
83.4
|
1.0
|
OD1
|
A:ASP691
|
2.5
|
89.5
|
1.0
|
O
|
A:VAL689
|
2.5
|
98.3
|
1.0
|
OE2
|
A:GLU658
|
2.7
|
90.5
|
1.0
|
OE1
|
A:GLU658
|
2.8
|
89.7
|
1.0
|
CD
|
A:GLU658
|
3.1
|
93.3
|
1.0
|
CD
|
A:GLU606
|
3.4
|
95.0
|
1.0
|
CG
|
A:ASP724
|
3.4
|
87.0
|
1.0
|
CG
|
A:ASP691
|
3.5
|
95.7
|
1.0
|
OE2
|
A:GLU606
|
3.5
|
87.9
|
1.0
|
CG
|
A:ASP688
|
3.6
|
88.3
|
1.0
|
C
|
A:VAL689
|
3.7
|
96.0
|
1.0
|
K
|
A:K903
|
3.8
|
85.4
|
1.0
|
OD2
|
A:ASP691
|
3.8
|
95.4
|
1.0
|
N
|
A:VAL689
|
3.9
|
92.0
|
1.0
|
NH2
|
A:ARG657
|
4.1
|
86.5
|
1.0
|
OD2
|
A:ASP688
|
4.1
|
88.2
|
1.0
|
CB
|
A:ASP724
|
4.1
|
85.6
|
1.0
|
N
|
A:ASP691
|
4.2
|
97.6
|
1.0
|
OD2
|
A:ASP724
|
4.3
|
85.3
|
1.0
|
CA
|
A:ASP724
|
4.3
|
85.7
|
1.0
|
OD1
|
A:ASN692
|
4.4
|
94.4
|
1.0
|
CG
|
A:ARG657
|
4.4
|
89.9
|
1.0
|
CA
|
A:VAL689
|
4.5
|
93.7
|
1.0
|
CG
|
A:GLU658
|
4.5
|
94.0
|
1.0
|
CG
|
A:GLU606
|
4.7
|
95.5
|
1.0
|
CB
|
A:ASP691
|
4.8
|
95.0
|
1.0
|
N
|
A:ASN690
|
4.8
|
97.3
|
1.0
|
CB
|
A:ASP688
|
4.8
|
90.1
|
1.0
|
CA
|
A:ASP688
|
4.8
|
90.0
|
1.0
|
C
|
A:ASP688
|
4.9
|
88.9
|
1.0
|
CA
|
A:ASP691
|
4.9
|
95.3
|
1.0
|
CA
|
A:ASN690
|
4.9
|
93.1
|
1.0
|
|
Calcium binding site 2 out
of 2 in 6bwn
Go back to
Calcium Binding Sites List in 6bwn
Calcium binding site 2 out
of 2 in the Crystal Structure of Mouse Protocadherin-15 EC6-7
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Mouse Protocadherin-15 EC6-7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca902
b:83.4
occ:1.00
|
O
|
A:ASN692
|
2.3
|
86.1
|
1.0
|
O
|
A:ASN728
|
2.3
|
87.6
|
1.0
|
OD1
|
A:ASN690
|
2.3
|
89.1
|
1.0
|
OD2
|
A:ASP722
|
2.4
|
90.4
|
1.0
|
OD2
|
A:ASP772
|
2.4
|
89.1
|
1.0
|
OD2
|
A:ASP724
|
2.6
|
85.3
|
1.0
|
OD1
|
A:ASP722
|
2.6
|
85.6
|
1.0
|
CG
|
A:ASP722
|
2.8
|
90.7
|
1.0
|
CG
|
A:ASP772
|
3.4
|
96.4
|
1.0
|
CG
|
A:ASN690
|
3.5
|
89.4
|
1.0
|
C
|
A:ASN692
|
3.5
|
88.8
|
1.0
|
CG
|
A:ASP724
|
3.5
|
87.0
|
1.0
|
C
|
A:ASN728
|
3.5
|
89.9
|
1.0
|
CB
|
A:ASP772
|
3.7
|
97.3
|
1.0
|
CB
|
A:ASP724
|
3.8
|
85.6
|
1.0
|
ND2
|
A:ASN690
|
4.1
|
90.4
|
1.0
|
CB
|
A:ASP722
|
4.3
|
89.3
|
1.0
|
CA
|
A:ASN692
|
4.3
|
89.2
|
1.0
|
N
|
A:ASN692
|
4.4
|
89.2
|
1.0
|
CA
|
A:ASN728
|
4.4
|
90.0
|
1.0
|
OD1
|
A:ASP772
|
4.5
|
96.5
|
1.0
|
N
|
A:GLY729
|
4.5
|
87.1
|
1.0
|
CB
|
A:ASN728
|
4.5
|
92.0
|
1.0
|
N
|
A:ALA693
|
4.5
|
86.1
|
1.0
|
CB
|
A:ASN692
|
4.5
|
90.4
|
1.0
|
CA
|
A:GLY729
|
4.6
|
88.9
|
1.0
|
CA
|
A:ALA693
|
4.6
|
84.6
|
1.0
|
OD1
|
A:ASP724
|
4.7
|
86.8
|
1.0
|
CB
|
A:ASN690
|
4.7
|
89.5
|
1.0
|
C
|
A:ALA693
|
4.8
|
85.8
|
1.0
|
CA
|
A:ASN690
|
4.9
|
93.1
|
1.0
|
N
|
A:ASP724
|
4.9
|
86.2
|
1.0
|
CD
|
A:PRO694
|
4.9
|
86.8
|
1.0
|
CA
|
A:ASP724
|
4.9
|
85.7
|
1.0
|
|
Reference:
B.L.Neel,
C.F.Klanseck,
M.Sotomayor.
Crystal Structure of Mouse Protocadherin-15 EC6-7 To Be Published.
Page generated: Sat Dec 12 06:00:30 2020
|