Calcium in PDB 6bwn: Crystal Structure of Mouse Protocadherin-15 EC6-7

The structure of Crystal Structure of Mouse Protocadherin-15 EC6-7, PDB code: 6bwn was solved by B.L.Neel, C.F.Klanseck, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	96.11 / 2.94
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	110.981, 110.981, 206.024, 90.00, 90.00, 120.00
R / Rfree (%)	21.7 / 24.2

The structure of Crystal Structure of Mouse Protocadherin-15 EC6-7 also contains other interesting chemical elements:

Potassium

(K)

1 atom

The binding sites of Calcium atom in the Crystal Structure of Mouse Protocadherin-15 EC6-7 (pdb code 6bwn). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Mouse Protocadherin-15 EC6-7, PDB code: 6bwn:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Mouse Protocadherin-15 EC6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse Protocadherin-15 EC6-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca901 b:78.8 occ:1.00 OD1 A:ASP724 2.3 86.8 1.0 OE1 A:GLU606 2.4 95.8 1.0 OD1 A:ASP688 2.5 83.4 1.0 OD1 A:ASP691 2.5 89.5 1.0 O A:VAL689 2.5 98.3 1.0 OE2 A:GLU658 2.7 90.5 1.0 OE1 A:GLU658 2.8 89.7 1.0 CD A:GLU658 3.1 93.3 1.0 CD A:GLU606 3.4 95.0 1.0 CG A:ASP724 3.4 87.0 1.0 CG A:ASP691 3.5 95.7 1.0 OE2 A:GLU606 3.5 87.9 1.0 CG A:ASP688 3.6 88.3 1.0 C A:VAL689 3.7 96.0 1.0 K A:K903 3.8 85.4 1.0 OD2 A:ASP691 3.8 95.4 1.0 N A:VAL689 3.9 92.0 1.0 NH2 A:ARG657 4.1 86.5 1.0 OD2 A:ASP688 4.1 88.2 1.0 CB A:ASP724 4.1 85.6 1.0 N A:ASP691 4.2 97.6 1.0 OD2 A:ASP724 4.3 85.3 1.0 CA A:ASP724 4.3 85.7 1.0 OD1 A:ASN692 4.4 94.4 1.0 CG A:ARG657 4.4 89.9 1.0 CA A:VAL689 4.5 93.7 1.0 CG A:GLU658 4.5 94.0 1.0 CG A:GLU606 4.7 95.5 1.0 CB A:ASP691 4.8 95.0 1.0 N A:ASN690 4.8 97.3 1.0 CB A:ASP688 4.8 90.1 1.0 CA A:ASP688 4.8 90.0 1.0 C A:ASP688 4.9 88.9 1.0 CA A:ASP691 4.9 95.3 1.0 CA A:ASN690 4.9 93.1 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Mouse Protocadherin-15 EC6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Mouse Protocadherin-15 EC6-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca902 b:83.4 occ:1.00 O A:ASN692 2.3 86.1 1.0 O A:ASN728 2.3 87.6 1.0 OD1 A:ASN690 2.3 89.1 1.0 OD2 A:ASP722 2.4 90.4 1.0 OD2 A:ASP772 2.4 89.1 1.0 OD2 A:ASP724 2.6 85.3 1.0 OD1 A:ASP722 2.6 85.6 1.0 CG A:ASP722 2.8 90.7 1.0 CG A:ASP772 3.4 96.4 1.0 CG A:ASN690 3.5 89.4 1.0 C A:ASN692 3.5 88.8 1.0 CG A:ASP724 3.5 87.0 1.0 C A:ASN728 3.5 89.9 1.0 CB A:ASP772 3.7 97.3 1.0 CB A:ASP724 3.8 85.6 1.0 ND2 A:ASN690 4.1 90.4 1.0 CB A:ASP722 4.3 89.3 1.0 CA A:ASN692 4.3 89.2 1.0 N A:ASN692 4.4 89.2 1.0 CA A:ASN728 4.4 90.0 1.0 OD1 A:ASP772 4.5 96.5 1.0 N A:GLY729 4.5 87.1 1.0 CB A:ASN728 4.5 92.0 1.0 N A:ALA693 4.5 86.1 1.0 CB A:ASN692 4.5 90.4 1.0 CA A:GLY729 4.6 88.9 1.0 CA A:ALA693 4.6 84.6 1.0 OD1 A:ASP724 4.7 86.8 1.0 CB A:ASN690 4.7 89.5 1.0 C A:ALA693 4.8 85.8 1.0 CA A:ASN690 4.9 93.1 1.0 N A:ASP724 4.9 86.2 1.0 CD A:PRO694 4.9 86.8 1.0 CA A:ASP724 4.9 85.7 1.0

B.L.Neel, C.F.Klanseck, M.Sotomayor. Crystal Structure of Mouse Protocadherin-15 EC6-7 To Be Published.