Calcium in PDB 6bxu: Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
Protein crystallography data
The structure of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T, PDB code: 6bxu
was solved by
B.L.Neel,
M.Sotomayor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
180.90 /
3.79
|
|
Space group
|
P 42 2 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
180.905,
180.905,
127.161,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
24 /
28.3
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
(pdb code 6bxu). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T, PDB code: 6bxu:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 1 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca901
b:0.6
occ:1.00
|
O
|
A:SER591
|
2.2
|
0.9
|
1.0
|
|
OE1
|
A:GLN590
|
2.3
|
1.0
|
1.0
|
|
OD2
|
A:ASP621
|
2.6
|
0.8
|
1.0
|
|
OD1
|
A:ASP671
|
2.6
|
0.1
|
1.0
|
|
OE1
|
A:GLU623
|
2.7
|
1.0
|
1.0
|
|
CG
|
A:ASP671
|
3.2
|
0.1
|
1.0
|
|
C
|
A:SER591
|
3.3
|
0.7
|
1.0
|
|
CG
|
A:ASP621
|
3.3
|
0.3
|
1.0
|
|
CD
|
A:GLN590
|
3.3
|
0.1
|
1.0
|
|
OD1
|
A:ASP621
|
3.4
|
0.6
|
1.0
|
|
OD2
|
A:ASP625
|
3.6
|
0.2
|
1.0
|
|
OD2
|
A:ASP671
|
3.7
|
0.6
|
1.0
|
|
CG
|
A:GLN590
|
3.8
|
0.8
|
1.0
|
|
CD
|
A:GLU623
|
3.8
|
0.2
|
1.0
|
|
N
|
A:SER591
|
3.9
|
0.8
|
1.0
|
|
O
|
A:PRO592
|
3.9
|
0.9
|
1.0
|
|
C
|
A:PRO592
|
3.9
|
0.3
|
1.0
|
|
CA
|
A:PRO592
|
4.0
|
0.0
|
1.0
|
|
CB
|
A:ASP671
|
4.1
|
0.1
|
1.0
|
|
N
|
A:PRO592
|
4.1
|
0.9
|
1.0
|
|
C
|
A:GLN590
|
4.2
|
0.3
|
1.0
|
|
CA
|
A:SER591
|
4.2
|
0.0
|
1.0
|
|
CA
|
A:GLN590
|
4.4
|
0.2
|
1.0
|
|
N
|
A:PRO593
|
4.4
|
0.8
|
1.0
|
|
CB
|
A:GLU623
|
4.5
|
0.8
|
1.0
|
|
OG
|
A:SER591
|
4.5
|
0.6
|
1.0
|
|
CG
|
A:GLU623
|
4.5
|
1.0
|
1.0
|
|
NE2
|
A:GLN590
|
4.5
|
0.1
|
1.0
|
|
N
|
A:GLU623
|
4.6
|
0.3
|
1.0
|
|
CG
|
A:ASP625
|
4.6
|
0.0
|
1.0
|
|
CB
|
A:ASP621
|
4.7
|
1.0
|
1.0
|
|
OE2
|
A:GLU623
|
4.7
|
0.8
|
1.0
|
|
CB
|
A:GLN590
|
4.7
|
1.0
|
1.0
|
|
O
|
A:GLN590
|
4.7
|
0.9
|
1.0
|
|
CD
|
A:PRO593
|
4.8
|
0.4
|
1.0
|
|
N
|
A:ARG622
|
4.8
|
0.4
|
1.0
|
|
CB
|
A:SER591
|
4.9
|
0.3
|
1.0
|
|
CA
|
A:ASP671
|
4.9
|
0.2
|
1.0
|
|
Calcium binding site 2 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 2 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca902
b:0.5
occ:1.00
|
OD1
|
A:ASP656
|
2.2
|
0.0
|
1.0
|
|
OE1
|
A:GLU606
|
2.4
|
0.7
|
1.0
|
|
OE1
|
A:GLU658
|
2.5
|
0.8
|
1.0
|
|
OD2
|
A:ASP691
|
2.8
|
0.4
|
1.0
|
|
OD1
|
A:ASP691
|
3.2
|
0.5
|
1.0
|
|
CG
|
A:ASP656
|
3.2
|
0.7
|
1.0
|
|
CG
|
A:ASP691
|
3.3
|
0.8
|
1.0
|
|
CA
|
A:CA903
|
3.4
|
98.9
|
1.0
|
|
CD
|
A:GLU606
|
3.4
|
0.4
|
1.0
|
|
CD
|
A:GLU658
|
3.5
|
0.6
|
1.0
|
|
OD2
|
A:ASP656
|
3.6
|
0.7
|
1.0
|
|
OD1
|
A:ASN692
|
3.7
|
0.4
|
1.0
|
|
OE2
|
A:GLU606
|
3.7
|
1.0
|
1.0
|
|
N
|
A:ARG657
|
4.0
|
0.8
|
1.0
|
|
OE2
|
A:GLU658
|
4.0
|
0.7
|
1.0
|
|
NE2
|
B:HIS776
|
4.3
|
0.5
|
1.0
|
|
CB
|
A:ASP656
|
4.4
|
1.0
|
1.0
|
|
CA
|
A:ASP656
|
4.4
|
0.9
|
1.0
|
|
N
|
A:GLU658
|
4.5
|
0.9
|
1.0
|
|
CG
|
A:ARG657
|
4.6
|
0.6
|
1.0
|
|
CG
|
A:GLU658
|
4.6
|
0.8
|
1.0
|
|
C
|
A:ASP656
|
4.7
|
0.7
|
1.0
|
|
CB
|
A:GLU658
|
4.8
|
0.3
|
1.0
|
|
CB
|
A:ASP691
|
4.8
|
0.3
|
1.0
|
|
CG
|
A:GLU606
|
4.8
|
0.9
|
1.0
|
|
CD2
|
B:HIS776
|
4.8
|
0.9
|
1.0
|
|
CG
|
A:ASN692
|
4.8
|
0.4
|
1.0
|
|
OD1
|
A:ASP724
|
4.9
|
0.6
|
1.0
|
|
CE1
|
B:HIS776
|
4.9
|
0.3
|
1.0
|
|
CA
|
A:ARG657
|
5.0
|
0.8
|
1.0
|
|
Calcium binding site 3 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 3 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca903
b:98.9
occ:1.00
|
OD1
|
A:ASP724
|
2.2
|
0.6
|
1.0
|
|
OD1
|
A:ASP691
|
2.5
|
0.5
|
1.0
|
|
OE2
|
A:GLU606
|
2.5
|
1.0
|
1.0
|
|
O
|
A:VAL689
|
2.6
|
0.6
|
1.0
|
|
OE2
|
A:GLU658
|
2.9
|
0.7
|
1.0
|
|
OD1
|
A:ASP688
|
3.0
|
0.4
|
1.0
|
|
OE1
|
A:GLU658
|
3.3
|
0.8
|
1.0
|
|
CA
|
A:CA902
|
3.4
|
0.5
|
1.0
|
|
CG
|
A:ASP724
|
3.4
|
0.9
|
1.0
|
|
CD
|
A:GLU606
|
3.4
|
0.4
|
1.0
|
|
CD
|
A:GLU658
|
3.5
|
0.6
|
1.0
|
|
CG
|
A:ASP691
|
3.6
|
0.8
|
1.0
|
|
OE1
|
A:GLU606
|
3.6
|
0.7
|
1.0
|
|
CG
|
A:ASP688
|
3.7
|
0.7
|
1.0
|
|
C
|
A:VAL689
|
3.8
|
0.4
|
1.0
|
|
CG
|
A:ARG657
|
3.9
|
0.6
|
1.0
|
|
N
|
A:VAL689
|
3.9
|
1.0
|
1.0
|
|
OD1
|
A:ASN692
|
3.9
|
0.4
|
1.0
|
|
OD2
|
A:ASP691
|
4.0
|
0.4
|
1.0
|
|
OD2
|
A:ASP688
|
4.0
|
0.0
|
1.0
|
|
CD
|
A:ARG657
|
4.2
|
0.6
|
1.0
|
|
CB
|
A:ASP724
|
4.3
|
0.5
|
1.0
|
|
OD2
|
A:ASP724
|
4.3
|
0.4
|
1.0
|
|
NH1
|
A:ARG657
|
4.3
|
0.2
|
1.0
|
|
CA
|
A:ASP724
|
4.4
|
0.1
|
1.0
|
|
N
|
A:ASP691
|
4.4
|
0.3
|
1.0
|
|
CA
|
A:VAL689
|
4.5
|
0.4
|
1.0
|
|
CG2
|
A:VAL689
|
4.5
|
0.0
|
1.0
|
|
CA
|
A:ASP688
|
4.7
|
0.3
|
1.0
|
|
CB
|
A:ASP688
|
4.8
|
0.2
|
1.0
|
|
C
|
A:ASP688
|
4.8
|
0.4
|
1.0
|
|
CB
|
A:ASP691
|
4.8
|
0.3
|
1.0
|
|
CG
|
A:GLU606
|
4.8
|
0.9
|
1.0
|
|
N
|
A:ASN690
|
4.9
|
0.1
|
1.0
|
|
Calcium binding site 4 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 4 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca904
b:0.6
occ:1.00
|
OD2
|
A:ASP722
|
2.4
|
0.7
|
1.0
|
|
O
|
A:ASN692
|
2.4
|
0.8
|
1.0
|
|
OD1
|
A:ASN690
|
2.4
|
0.4
|
1.0
|
|
OD2
|
A:ASP724
|
2.5
|
0.4
|
1.0
|
|
OD2
|
A:ASP772
|
2.7
|
0.7
|
1.0
|
|
O
|
A:ASN728
|
2.8
|
0.7
|
1.0
|
|
OD1
|
A:ASP722
|
2.9
|
0.6
|
1.0
|
|
CG
|
A:ASP722
|
3.0
|
0.8
|
1.0
|
|
CG
|
A:ASP772
|
3.3
|
0.0
|
1.0
|
|
CG
|
A:ASN690
|
3.4
|
0.6
|
1.0
|
|
CG
|
A:ASP724
|
3.5
|
0.9
|
1.0
|
|
C
|
A:ASN692
|
3.6
|
1.0
|
1.0
|
|
CB
|
A:ASP724
|
3.7
|
0.5
|
1.0
|
|
C
|
A:ASN728
|
3.9
|
0.0
|
1.0
|
|
OD1
|
A:ASP772
|
4.0
|
0.8
|
1.0
|
|
CB
|
A:ASP772
|
4.0
|
0.0
|
1.0
|
|
ND2
|
A:ASN690
|
4.0
|
0.4
|
1.0
|
|
N
|
A:ASN692
|
4.2
|
0.8
|
1.0
|
|
CB
|
A:ASN728
|
4.3
|
0.1
|
1.0
|
|
CA
|
A:ASN692
|
4.3
|
0.4
|
1.0
|
|
CA
|
A:ASN690
|
4.4
|
0.0
|
1.0
|
|
CB
|
A:ASN690
|
4.4
|
0.5
|
1.0
|
|
CB
|
A:ASP722
|
4.4
|
0.9
|
1.0
|
|
CA
|
A:ASN728
|
4.5
|
0.5
|
1.0
|
|
N
|
A:ALA693
|
4.5
|
0.4
|
1.0
|
|
OD1
|
A:ASP724
|
4.6
|
0.6
|
1.0
|
|
CB
|
A:ASN692
|
4.7
|
0.6
|
1.0
|
|
C
|
A:ASN690
|
4.7
|
0.4
|
1.0
|
|
CA
|
A:ALA693
|
4.7
|
1.0
|
1.0
|
|
N
|
A:ASP691
|
4.8
|
0.3
|
1.0
|
|
CD
|
A:ARG778
|
4.8
|
0.9
|
1.0
|
|
Calcium binding site 5 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 5 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca905
b:0.8
occ:1.00
|
OD1
|
A:ASN482
|
2.4
|
0.7
|
1.0
|
|
O
|
A:ASN484
|
2.5
|
0.2
|
1.0
|
|
OD2
|
A:ASP566
|
2.6
|
0.2
|
1.0
|
|
O
|
A:ASN520
|
2.8
|
0.5
|
1.0
|
|
OD1
|
A:ASP514
|
2.8
|
0.8
|
1.0
|
|
OD2
|
A:ASP514
|
2.9
|
0.6
|
1.0
|
|
CG
|
A:ASP514
|
3.2
|
0.8
|
1.0
|
|
CG
|
A:ASP566
|
3.5
|
0.0
|
1.0
|
|
OD2
|
A:ASP516
|
3.5
|
0.6
|
1.0
|
|
CG
|
A:ASN482
|
3.5
|
0.6
|
1.0
|
|
C
|
A:ASN520
|
3.7
|
0.0
|
1.0
|
|
C
|
A:ASN484
|
3.7
|
0.3
|
1.0
|
|
CB
|
A:ASP566
|
3.8
|
0.1
|
1.0
|
|
CB
|
A:ASP516
|
3.9
|
0.2
|
1.0
|
|
CB
|
A:ASN520
|
4.1
|
0.1
|
1.0
|
|
ND2
|
A:ASN482
|
4.1
|
0.3
|
1.0
|
|
CG
|
A:ASP516
|
4.1
|
0.3
|
1.0
|
|
N
|
A:ASN484
|
4.2
|
0.7
|
1.0
|
|
CA
|
A:ASN520
|
4.4
|
0.6
|
1.0
|
|
CA
|
A:ASN484
|
4.4
|
0.5
|
1.0
|
|
OD1
|
A:ASP566
|
4.4
|
0.4
|
1.0
|
|
N
|
A:GLY521
|
4.6
|
0.6
|
1.0
|
|
CB
|
A:ASP514
|
4.7
|
0.6
|
1.0
|
|
CB
|
A:ASN484
|
4.7
|
0.6
|
1.0
|
|
CB
|
A:ASN482
|
4.8
|
0.4
|
1.0
|
|
N
|
A:THR485
|
4.8
|
0.6
|
1.0
|
|
O
|
A:ASP516
|
4.9
|
0.9
|
1.0
|
|
N
|
A:ASP483
|
4.9
|
0.0
|
1.0
|
|
CA
|
A:GLY521
|
4.9
|
0.1
|
1.0
|
|
NH2
|
A:ARG574
|
5.0
|
0.8
|
1.0
|
|
CA
|
A:ASN482
|
5.0
|
0.6
|
1.0
|
|
Calcium binding site 6 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 6 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca901
b:0.7
occ:1.00
|
O
|
B:SER591
|
2.4
|
0.4
|
1.0
|
|
OE1
|
B:GLN590
|
2.4
|
0.3
|
1.0
|
|
OD2
|
B:ASP671
|
2.5
|
0.9
|
1.0
|
|
OD1
|
B:ASP621
|
2.7
|
0.3
|
1.0
|
|
OE1
|
B:GLU623
|
2.7
|
0.5
|
1.0
|
|
OD2
|
B:ASP625
|
2.8
|
0.9
|
1.0
|
|
CG
|
B:ASP671
|
3.2
|
0.9
|
1.0
|
|
OD1
|
B:ASP671
|
3.2
|
0.6
|
1.0
|
|
OD2
|
B:ASP621
|
3.4
|
0.7
|
1.0
|
|
CG
|
B:ASP621
|
3.4
|
0.5
|
1.0
|
|
CD
|
B:GLU623
|
3.4
|
1.0
|
1.0
|
|
C
|
B:SER591
|
3.5
|
1.0
|
1.0
|
|
CD
|
B:GLN590
|
3.6
|
0.6
|
1.0
|
|
N
|
B:SER591
|
3.8
|
0.6
|
1.0
|
|
CG
|
B:ASP625
|
4.0
|
0.3
|
1.0
|
|
OE2
|
B:GLU623
|
4.0
|
0.9
|
1.0
|
|
CA
|
B:GLN590
|
4.0
|
0.0
|
1.0
|
|
CB
|
B:GLU623
|
4.1
|
0.6
|
1.0
|
|
OG
|
B:SER591
|
4.2
|
0.4
|
1.0
|
|
CG
|
B:GLU623
|
4.2
|
0.5
|
1.0
|
|
C
|
B:GLN590
|
4.2
|
0.1
|
1.0
|
|
CA
|
B:SER591
|
4.2
|
0.6
|
1.0
|
|
NE2
|
B:GLN590
|
4.4
|
0.1
|
1.0
|
|
CB
|
B:GLN590
|
4.5
|
0.1
|
1.0
|
|
N
|
B:GLU623
|
4.5
|
0.8
|
1.0
|
|
NH1
|
B:ARG673
|
4.5
|
0.8
|
1.0
|
|
N
|
B:PRO592
|
4.5
|
0.7
|
1.0
|
|
CB
|
B:ASP671
|
4.6
|
0.4
|
1.0
|
|
CB
|
B:ASP625
|
4.6
|
0.8
|
1.0
|
|
O
|
B:PRO592
|
4.6
|
0.3
|
1.0
|
|
CG
|
B:GLN590
|
4.7
|
0.7
|
1.0
|
|
C
|
B:PRO592
|
4.7
|
0.8
|
1.0
|
|
CA
|
B:PRO592
|
4.7
|
0.8
|
1.0
|
|
CB
|
B:ASP621
|
4.9
|
0.7
|
1.0
|
|
NE
|
B:ARG673
|
4.9
|
0.8
|
1.0
|
|
CB
|
B:SER591
|
4.9
|
0.1
|
1.0
|
|
OD1
|
B:ASP625
|
4.9
|
0.5
|
1.0
|
|
CA
|
B:GLU623
|
4.9
|
0.9
|
1.0
|
|
Calcium binding site 7 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 7 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca902
b:0.1
occ:1.00
|
O
|
B:ASN692
|
2.3
|
0.6
|
1.0
|
|
OD2
|
B:ASP722
|
2.5
|
0.5
|
1.0
|
|
OD1
|
B:ASN690
|
2.6
|
0.1
|
1.0
|
|
OD2
|
B:ASP724
|
2.6
|
0.5
|
1.0
|
|
O
|
B:ASN728
|
3.0
|
0.6
|
1.0
|
|
OD1
|
B:ASP722
|
3.1
|
0.0
|
1.0
|
|
CG
|
B:ASP722
|
3.1
|
0.3
|
1.0
|
|
OD2
|
B:ASP772
|
3.2
|
0.5
|
1.0
|
|
CG
|
B:ASP772
|
3.3
|
0.4
|
1.0
|
|
CG
|
B:ASN690
|
3.4
|
0.2
|
1.0
|
|
C
|
B:ASN692
|
3.5
|
0.8
|
1.0
|
|
CB
|
B:ASP772
|
3.6
|
0.4
|
1.0
|
|
CG
|
B:ASP724
|
3.7
|
0.5
|
1.0
|
|
ND2
|
B:ASN690
|
3.8
|
0.1
|
1.0
|
|
OD1
|
B:ASP772
|
3.8
|
0.5
|
1.0
|
|
CB
|
B:ASP724
|
4.0
|
0.6
|
1.0
|
|
C
|
B:ASN728
|
4.1
|
0.8
|
1.0
|
|
N
|
B:ASN692
|
4.3
|
0.7
|
1.0
|
|
CA
|
B:ASN692
|
4.3
|
0.4
|
1.0
|
|
N
|
B:ALA693
|
4.5
|
0.4
|
1.0
|
|
CB
|
B:ASN692
|
4.6
|
0.5
|
1.0
|
|
CB
|
B:ASN728
|
4.6
|
0.8
|
1.0
|
|
CB
|
B:ASN690
|
4.6
|
0.1
|
1.0
|
|
CA
|
B:ALA693
|
4.6
|
0.8
|
1.0
|
|
CA
|
B:ASN728
|
4.6
|
0.5
|
1.0
|
|
CA
|
B:ASN690
|
4.6
|
0.7
|
1.0
|
|
CB
|
B:ASP722
|
4.6
|
0.1
|
1.0
|
|
CD
|
B:PRO694
|
4.7
|
0.3
|
1.0
|
|
OD1
|
B:ASP724
|
4.8
|
0.8
|
1.0
|
|
CB
|
B:ARG778
|
4.9
|
0.2
|
1.0
|
|
N
|
B:PRO694
|
4.9
|
0.2
|
1.0
|
|
C
|
B:ALA693
|
4.9
|
0.6
|
1.0
|
|
Calcium binding site 8 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 8 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca903
b:0.8
occ:1.00
|
OE1
|
B:GLU606
|
2.3
|
0.3
|
1.0
|
|
OD1
|
B:ASP691
|
2.6
|
0.7
|
1.0
|
|
CG
|
B:ASP691
|
2.9
|
0.9
|
1.0
|
|
OD2
|
B:ASP691
|
3.0
|
0.7
|
1.0
|
|
OE1
|
B:GLU658
|
3.0
|
0.8
|
1.0
|
|
OD2
|
B:ASP656
|
3.1
|
0.7
|
1.0
|
|
CG
|
B:ASP656
|
3.2
|
0.5
|
1.0
|
|
OD1
|
B:ASP656
|
3.4
|
0.1
|
1.0
|
|
OE2
|
B:GLU658
|
3.4
|
0.3
|
1.0
|
|
CD
|
B:GLU606
|
3.5
|
0.1
|
1.0
|
|
CD
|
B:GLU658
|
3.5
|
0.8
|
1.0
|
|
CA
|
B:CA904
|
3.9
|
0.9
|
1.0
|
|
CA
|
B:ASP656
|
4.0
|
0.6
|
1.0
|
|
CB
|
B:ASP656
|
4.0
|
0.4
|
1.0
|
|
OE2
|
B:GLU606
|
4.0
|
0.1
|
1.0
|
|
CB
|
B:ASP691
|
4.0
|
0.9
|
1.0
|
|
N
|
B:ARG657
|
4.2
|
0.3
|
1.0
|
|
NE2
|
A:HIS776
|
4.4
|
0.2
|
1.0
|
|
C
|
B:ASP656
|
4.6
|
0.4
|
1.0
|
|
CE1
|
A:HIS776
|
4.7
|
0.6
|
1.0
|
|
CG
|
B:GLU606
|
4.7
|
0.5
|
1.0
|
|
ND2
|
B:ASN692
|
4.7
|
0.6
|
1.0
|
|
CG
|
B:GLU658
|
4.9
|
0.9
|
1.0
|
|
O
|
B:LEU655
|
4.9
|
0.1
|
1.0
|
|
N
|
B:GLU658
|
5.0
|
0.8
|
1.0
|
|
Calcium binding site 9 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 9 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca904
b:0.9
occ:1.00
|
OD2
|
B:ASP691
|
2.2
|
0.7
|
1.0
|
|
OD1
|
B:ASP688
|
2.3
|
0.9
|
1.0
|
|
OD1
|
B:ASP724
|
2.4
|
0.8
|
1.0
|
|
OE2
|
B:GLU606
|
2.4
|
0.1
|
1.0
|
|
O
|
B:VAL689
|
2.8
|
0.1
|
1.0
|
|
OE2
|
B:GLU658
|
3.0
|
0.3
|
1.0
|
|
OE1
|
B:GLU658
|
3.1
|
0.8
|
1.0
|
|
CG
|
B:ASP691
|
3.3
|
0.9
|
1.0
|
|
CD
|
B:GLU658
|
3.3
|
0.8
|
1.0
|
|
NH1
|
B:ARG657
|
3.3
|
0.9
|
1.0
|
|
CD
|
B:GLU606
|
3.4
|
0.1
|
1.0
|
|
CG
|
B:ASP688
|
3.5
|
0.2
|
1.0
|
|
OE1
|
B:GLU606
|
3.5
|
0.3
|
1.0
|
|
CG
|
B:ASP724
|
3.6
|
0.5
|
1.0
|
|
OD1
|
B:ASP691
|
3.7
|
0.7
|
1.0
|
|
N
|
B:VAL689
|
3.9
|
0.3
|
1.0
|
|
CA
|
B:CA903
|
3.9
|
0.8
|
1.0
|
|
C
|
B:VAL689
|
3.9
|
1.0
|
1.0
|
|
OD2
|
B:ASP688
|
4.2
|
0.1
|
1.0
|
|
CA
|
B:ASP724
|
4.2
|
0.3
|
1.0
|
|
CB
|
B:ASP724
|
4.3
|
0.6
|
1.0
|
|
N
|
B:ASP691
|
4.4
|
0.8
|
1.0
|
|
CB
|
B:ASP691
|
4.5
|
0.9
|
1.0
|
|
CG
|
B:GLU658
|
4.5
|
0.9
|
1.0
|
|
OD2
|
B:ASP724
|
4.5
|
0.5
|
1.0
|
|
CG2
|
B:VAL689
|
4.6
|
0.1
|
1.0
|
|
CA
|
B:VAL689
|
4.6
|
0.9
|
1.0
|
|
CB
|
B:ASP688
|
4.6
|
0.2
|
1.0
|
|
CZ
|
B:ARG657
|
4.6
|
0.0
|
1.0
|
|
CA
|
B:ASP688
|
4.6
|
0.8
|
1.0
|
|
CG
|
B:GLU606
|
4.7
|
0.5
|
1.0
|
|
C
|
B:ASP688
|
4.8
|
0.3
|
1.0
|
|
CB
|
B:ARG657
|
4.8
|
0.1
|
1.0
|
|
ND2
|
B:ASN692
|
4.9
|
0.6
|
1.0
|
|
N
|
B:ASP724
|
5.0
|
0.4
|
1.0
|
|
Calcium binding site 10 out
of 10 in 6bxu
Go back to
Calcium Binding Sites List in 6bxu
Calcium binding site 10 out
of 10 in the Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca905
b:0.7
occ:1.00
|
OD1
|
B:ASN482
|
2.3
|
0.8
|
1.0
|
|
O
|
B:ASN484
|
2.5
|
0.8
|
1.0
|
|
OD1
|
B:ASP514
|
2.5
|
0.7
|
1.0
|
|
OD2
|
B:ASP566
|
2.5
|
0.5
|
1.0
|
|
O
|
B:ASN520
|
2.5
|
1.0
|
1.0
|
|
OD2
|
B:ASP514
|
2.7
|
0.1
|
1.0
|
|
OD1
|
B:ASP516
|
2.8
|
0.3
|
1.0
|
|
CG
|
B:ASP514
|
2.9
|
1.0
|
1.0
|
|
CG
|
B:ASN482
|
3.2
|
0.7
|
1.0
|
|
CG
|
B:ASP566
|
3.4
|
0.7
|
1.0
|
|
ND2
|
B:ASN482
|
3.5
|
0.1
|
1.0
|
|
CG
|
B:ASP516
|
3.6
|
0.4
|
1.0
|
|
OD1
|
B:ASP566
|
3.6
|
0.8
|
1.0
|
|
C
|
B:ASN484
|
3.7
|
0.4
|
1.0
|
|
OD2
|
B:ASP516
|
3.7
|
0.3
|
1.0
|
|
C
|
B:ASN520
|
3.7
|
0.8
|
1.0
|
|
N
|
B:ASN484
|
4.0
|
0.0
|
1.0
|
|
CB
|
B:ASN520
|
4.2
|
0.2
|
1.0
|
|
CA
|
B:ASN484
|
4.3
|
0.8
|
1.0
|
|
CB
|
B:ASP514
|
4.4
|
0.2
|
1.0
|
|
CA
|
B:ASN520
|
4.5
|
0.3
|
1.0
|
|
CB
|
B:ASN482
|
4.5
|
0.2
|
1.0
|
|
ND2
|
B:ASN520
|
4.6
|
0.1
|
1.0
|
|
CB
|
B:ASN484
|
4.6
|
0.1
|
1.0
|
|
N
|
B:GLY521
|
4.7
|
0.7
|
1.0
|
|
CD
|
B:PRO486
|
4.7
|
0.3
|
1.0
|
|
N
|
B:THR485
|
4.7
|
0.5
|
1.0
|
|
N
|
B:ASP483
|
4.7
|
0.9
|
1.0
|
|
CB
|
B:ASP566
|
4.8
|
0.7
|
1.0
|
|
O
|
B:ASP516
|
4.8
|
0.1
|
1.0
|
|
CG
|
B:ASN520
|
4.8
|
0.9
|
1.0
|
|
CA
|
B:ASN482
|
4.9
|
0.6
|
1.0
|
|
CA
|
B:GLY521
|
4.9
|
0.8
|
1.0
|
|
CB
|
B:ASP516
|
5.0
|
0.6
|
1.0
|
|
Reference:
B.L.Neel,
M.Sotomayor.
Crystal Structure of Mouse Protocadherin-15 EC5-7 I582T To Be Published.
Page generated: Mon Jul 15 17:12:30 2024
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