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Calcium in PDB 6bz3: Complex Structure of Fak Fat Domain and Dcc P3 Motif

Enzymatic activity of Complex Structure of Fak Fat Domain and Dcc P3 Motif

All present enzymatic activity of Complex Structure of Fak Fat Domain and Dcc P3 Motif:
2.7.10.2;

Protein crystallography data

The structure of Complex Structure of Fak Fat Domain and Dcc P3 Motif, PDB code: 6bz3 was solved by S.Xu, J.-H.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.89 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 129.178, 36.130, 65.429, 90.00, 104.30, 90.00
R / Rfree (%) 22.6 / 26.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Complex Structure of Fak Fat Domain and Dcc P3 Motif (pdb code 6bz3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Complex Structure of Fak Fat Domain and Dcc P3 Motif, PDB code: 6bz3:

Calcium binding site 1 out of 1 in 6bz3

Go back to Calcium Binding Sites List in 6bz3
Calcium binding site 1 out of 1 in the Complex Structure of Fak Fat Domain and Dcc P3 Motif


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Complex Structure of Fak Fat Domain and Dcc P3 Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1101

b:81.5
occ:0.70
O C:GLN943 2.3 51.4 1.0
O C:SER940 2.4 49.9 1.0
O A:GLN943 2.4 55.8 1.0
O A:SER940 2.4 53.5 1.0
O C:LYS941 2.5 50.0 1.0
O A:LYS941 2.6 53.7 1.0
C C:LYS941 3.0 48.1 1.0
C A:LYS941 3.1 51.9 1.0
CA A:LYS941 3.3 51.0 1.0
CA C:LYS941 3.3 46.7 1.0
C C:SER940 3.4 47.1 1.0
C A:SER940 3.4 50.5 1.0
C C:GLN943 3.4 52.2 1.0
C A:GLN943 3.6 56.5 1.0
N C:LYS941 3.8 46.0 1.0
N A:LYS941 3.8 49.4 1.0
N C:GLN943 3.9 49.5 1.0
N C:ILE942 4.0 47.2 1.0
N A:ILE942 4.1 52.5 1.0
C C:ILE942 4.2 49.4 1.0
N A:GLN943 4.2 56.2 1.0
C A:ILE942 4.3 56.0 1.0
CA C:GLN943 4.3 53.2 1.0
CA A:PRO944 4.3 54.9 1.0
N C:PRO944 4.3 55.7 1.0
N A:PRO944 4.4 54.9 1.0
CA C:PRO944 4.4 56.1 1.0
CA A:GLN943 4.5 58.1 1.0
O A:ILE942 4.5 58.8 1.0
O C:ILE942 4.5 50.1 1.0
N A:ALA945 4.6 55.1 1.0
CB A:LYS941 4.6 50.1 1.0
CA C:ILE942 4.6 47.4 1.0
CB C:LYS941 4.6 46.6 1.0
CA C:SER940 4.7 47.7 1.0
CA A:ILE942 4.7 54.2 1.0
CA A:SER940 4.8 49.3 1.0
C A:PRO944 4.9 56.0 1.0
N C:ALA945 5.0 59.0 1.0

Reference:

S.Xu, Y.Liu, X.Li, Y.Liu, R.Meijers, Y.Zhang, J.H.Wang. The Binding of Dcc-P3 Motif and Fak-Fat Domain Mediates the Initial Step of Netrin-1/Dcc Signaling For Axon Attraction. Cell Discov V. 4 8 2018.
ISSN: ESSN 2056-5968
PubMed: 29479476
DOI: 10.1038/S41421-017-0008-8
Page generated: Mon Jul 15 17:15:46 2024

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