Calcium in PDB 6bzn: Crystal Structure of Halogenase Pltm

Enzymatic activity of Crystal Structure of Halogenase Pltm

All present enzymatic activity of Crystal Structure of Halogenase Pltm:
3.8.1.1;

Protein crystallography data

The structure of Crystal Structure of Halogenase Pltm, PDB code: 6bzn was solved by A.H.Pang, S.Garneau-Tsodikova, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.88 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.235, 157.107, 214.015, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 18.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Halogenase Pltm (pdb code 6bzn). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Crystal Structure of Halogenase Pltm, PDB code: 6bzn:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in 6bzn

Go back to Calcium Binding Sites List in 6bzn
Calcium binding site 1 out of 7 in the Crystal Structure of Halogenase Pltm


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Halogenase Pltm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca601

b:19.8
occ:1.00
 OD2 A:ASP5 2.3 17.2 1.0
O A:HOH1020 2.3 25.0 1.0
OD1 A:ASP5 2.6 17.9 1.0
CG A:ASP5 2.8 17.0 1.0
O A:HOH732 4.2 44.2 1.0
CB A:ASP5 4.3 16.0 1.0
OD1 A:ASN28 4.3 18.4 0.5
N A:ASN28 4.6 16.0 0.5
N A:ASN28 4.6 15.9 0.5
CB A:ASN28 4.7 16.4 0.5
CB A:ASN28 4.8 16.7 0.5
O A:GLY26 4.8 19.1 1.0
O A:HOH740 4.9 33.8 1.0
N A:ASP5 4.9 15.9 1.0
CG A:ASN28 4.9 17.5 0.5
CA A:ASP5 4.9 15.7 1.0
O A:HOH1093 5.0 51.3 1.0

Calcium binding site 2 out of 7 in 6bzn

Go back to Calcium Binding Sites List in 6bzn
Calcium binding site 2 out of 7 in the Crystal Structure of Halogenase Pltm


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Halogenase Pltm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca602

b:36.9
occ:1.00
 O A:HOH982 3.2 13.2 1.0
O A:HOH929 3.2 16.6 1.0
CA A:GLY43 3.7 14.3 1.0
CZ A:PHE325 3.8 14.3 1.0
O A:HOH1128 3.9 33.0 1.0
CA A:PRO328 3.9 12.2 1.0
O A:HOH986 3.9 39.1 1.0
C2 A:GOL604 3.9 18.2 1.0
O2 A:GOL604 4.0 17.9 1.0
CE1 A:PHE325 4.0 14.4 1.0
O A:HOH1171 4.1 30.7 1.0
CB A:PRO328 4.2 13.0 1.0
N A:GLY43 4.4 14.9 1.0
O A:PRO328 4.6 11.6 1.0
N A:PRO328 4.7 12.5 1.0
OG A:SER331 4.7 13.1 1.0
C A:PRO328 4.8 12.1 1.0
C1 A:GOL604 4.8 18.3 1.0
O A:ASP327 4.8 12.6 1.0
O1 A:GOL604 4.8 16.3 1.0
C A:GLY43 4.9 13.6 1.0
CA A:SER331 4.9 12.1 1.0
O A:HOH1061 4.9 33.3 1.0

Calcium binding site 3 out of 7 in 6bzn

Go back to Calcium Binding Sites List in 6bzn
Calcium binding site 3 out of 7 in the Crystal Structure of Halogenase Pltm


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Halogenase Pltm within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca601

b:25.1
occ:1.00
 O B:HOH1042 2.3 35.4 1.0
OD2 B:ASP5 2.3 22.5 1.0
OD1 B:ASP5 2.6 22.7 1.0
CG B:ASP5 2.8 21.9 1.0
OD1 B:ASN28 4.2 23.7 0.5
CB B:ASP5 4.3 20.3 1.0
N B:ASN28 4.5 18.0 0.5
N B:ASN28 4.5 18.6 0.5
CB B:ASN28 4.6 18.6 0.5
O B:HOH705 4.8 33.0 1.0
O B:GLY26 4.8 20.3 1.0
O B:HOH1057 4.9 39.7 1.0
CB B:ASN28 4.9 20.2 0.5
CG B:ASN28 4.9 21.5 0.5
N B:ASP5 4.9 20.2 1.0

Calcium binding site 4 out of 7 in 6bzn

Go back to Calcium Binding Sites List in 6bzn
Calcium binding site 4 out of 7 in the Crystal Structure of Halogenase Pltm


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Halogenase Pltm within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca601

b:18.5
occ:1.00
 OD1 C:ASN98 2.3 17.4 1.0
O C:HOH1006 2.3 19.9 1.0
CG C:ASN98 3.4 16.7 1.0
ND2 C:ASN98 3.8 17.4 1.0
OE2 C:GLU97 4.2 33.8 1.0
O C:HOH734 4.3 15.7 1.0
O C:HOH1169 4.3 32.1 1.0
O C:HOH869 4.3 46.1 1.0
CG C:GLU97 4.5 28.1 1.0
CB C:ASN98 4.7 16.5 1.0
CD C:GLU97 4.7 31.8 1.0

Calcium binding site 5 out of 7 in 6bzn

Go back to Calcium Binding Sites List in 6bzn
Calcium binding site 5 out of 7 in the Crystal Structure of Halogenase Pltm


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Halogenase Pltm within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca602

b:34.9
occ:1.00
 O C:HOH897 3.1 14.9 1.0
O C:HOH941 3.2 15.1 1.0
O C:HOH1190 3.2 39.2 1.0
CA C:GLY43 3.8 14.7 1.0
CZ C:PHE325 3.8 12.9 1.0
O C:HOH926 3.8 40.0 1.0
CA C:PRO328 3.9 11.1 1.0
CE1 C:PHE325 3.9 13.5 1.0
O2 C:GOL604 4.0 15.4 1.0
C2 C:GOL604 4.0 15.8 1.0
O C:HOH1218 4.2 33.1 1.0
N C:GLY43 4.3 15.4 1.0
CB C:PRO328 4.4 11.1 1.0
OG C:SER331 4.6 12.4 1.0
O C:PRO328 4.7 10.4 1.0
N C:PRO328 4.7 10.9 1.0
O C:ASP327 4.8 10.2 1.0
C C:PRO328 4.8 10.8 1.0
CA C:SER331 4.9 10.8 1.0
C C:GLY43 4.9 13.3 1.0
O1 C:GOL604 4.9 14.9 1.0
C1 C:GOL604 5.0 16.1 1.0

Calcium binding site 6 out of 7 in 6bzn

Go back to Calcium Binding Sites List in 6bzn
Calcium binding site 6 out of 7 in the Crystal Structure of Halogenase Pltm


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Halogenase Pltm within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca601

b:18.9
occ:1.00
 OD1 D:ASN98 2.3 17.3 1.0
O D:HOH788 2.3 20.9 1.0
O D:HOH776 2.3 20.4 1.0
O D:HOH1102 2.3 22.1 1.0
CG D:ASN98 3.3 16.0 1.0
ND2 D:ASN98 3.7 17.2 1.0
O D:HOH899 4.1 49.5 1.0
O D:HOH767 4.3 18.5 1.0
O D:HOH1160 4.3 34.3 1.0
OE2 D:GLU97 4.4 33.0 1.0
CB D:ASN98 4.7 16.4 1.0
CG D:GLU97 4.7 27.5 1.0

Calcium binding site 7 out of 7 in 6bzn

Go back to Calcium Binding Sites List in 6bzn
Calcium binding site 7 out of 7 in the Crystal Structure of Halogenase Pltm


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Halogenase Pltm within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca602

b:36.7
occ:1.00
 O D:HOH983 3.1 14.0 1.0
O D:HOH963 3.1 15.5 1.0
O D:HOH1170 3.2 36.1 1.0
CA D:GLY43 3.8 14.3 1.0
O2 D:GOL603 3.9 17.1 1.0
CA D:PRO328 3.9 13.3 1.0
O D:HOH966 3.9 40.2 1.0
C2 D:GOL603 3.9 18.1 1.0
CZ D:PHE325 3.9 17.3 1.0
CE1 D:PHE325 4.1 17.8 1.0
CB D:PRO328 4.2 13.7 1.0
N D:GLY43 4.4 15.3 1.0
O D:HOH1184 4.5 34.8 1.0
OG D:SER331 4.5 14.5 1.0
O D:PRO328 4.6 12.3 1.0
N D:PRO328 4.7 13.8 1.0
C D:PRO328 4.7 12.8 1.0
O D:ASP327 4.8 14.5 1.0
CA D:SER331 4.8 12.7 1.0
O1 D:GOL603 4.8 16.7 1.0
O3 D:GOL603 4.9 17.2 1.0
C3 D:GOL603 4.9 17.9 1.0
C1 D:GOL603 4.9 18.2 1.0
C D:GLY43 4.9 13.7 1.0

Reference:

S.Mori, A.H.Pang, N.Thamban Chandrika, S.Garneau-Tsodikova, O.V.Tsodikov. Unusual Substrate and Halide Versatility of Phenolic Halogenase Pltm. Nat Commun V. 10 1255 2019.
ISSN: ESSN 2041-1723
PubMed: 30890712
DOI: 10.1038/S41467-019-09215-9
Page generated: Sat Dec 12 06:00:51 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy