Calcium in PDB 6c6g: An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.

Enzymatic activity of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.

All present enzymatic activity of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.:
3.5.1.84;

Protein crystallography data

The structure of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex., PDB code: 6c6g was solved by T.S.Peat, L.Esquirol, M.Wilding, J.W.Liu, N.G.French, C.J.Hartley, O.Hideki, C.J.Easton, J.Newman, C.Scott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 74.91 / 2.10
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 78.629, 88.909, 141.852, 90.00, 101.32, 90.00
R / Rfree (%) 16.6 / 21

Calcium Binding Sites:

The binding sites of Calcium atom in the An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex. (pdb code 6c6g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex., PDB code: 6c6g:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6c6g

Go back to Calcium Binding Sites List in 6c6g
Calcium binding site 1 out of 2 in the An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:17.9
occ:1.00
 O A:HOH824 3.1 20.8 1.0
ND2 A:ASN172 3.2 10.1 1.0
O A:HOH797 3.2 10.9 1.0
O2 A:SVV174 3.3 12.4 1.0
CD1 A:TYR125 3.6 8.9 1.0
CE1 A:TYR125 3.8 8.9 1.0
CE2 A:PHE202 3.8 11.0 1.0
CZ A:PHE202 4.0 10.9 1.0
CB A:ASN172 4.1 10.3 1.0
CG A:ASN172 4.1 10.8 1.0
CG2 A:THR305 4.1 10.1 1.0
CZ A:PHE127 4.2 11.8 1.0
O A:HOH745 4.2 12.2 1.0
CE2 A:PHE127 4.4 11.7 1.0
P1 A:SVV174 4.4 12.0 1.0
N A:GLY126 4.6 10.5 1.0
O A:ALA124 4.8 9.4 1.0
O3 A:SVV174 4.8 12.8 1.0
N4 A:SVV174 4.8 12.9 1.0
CE1 A:PHE127 4.8 11.7 1.0
CA A:TYR125 4.9 9.7 1.0
CG A:TYR125 4.9 9.2 1.0

Calcium binding site 2 out of 2 in 6c6g

Go back to Calcium Binding Sites List in 6c6g
Calcium binding site 2 out of 2 in the An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of An S-Triazine Catabolic Enzyme. Inhibitor Bound Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:16.9
occ:1.00
 ND2 B:ASN172 3.2 7.5 1.0
O2 B:SVV174 3.2 13.5 1.0
O B:HOH820 3.2 15.9 1.0
O B:HOH812 3.3 11.0 1.0
CD1 B:TYR125 3.7 11.2 1.0
CE1 B:TYR125 3.8 11.1 1.0
CE2 B:PHE202 3.9 11.0 1.0
CB B:ASN172 4.0 8.6 1.0
CG B:ASN172 4.1 8.5 1.0
CZ B:PHE202 4.1 11.2 1.0
CZ B:PHE127 4.1 9.9 1.0
CG2 B:THR305 4.2 9.7 1.0
CE2 B:PHE127 4.3 10.3 1.0
O B:HOH730 4.3 13.9 1.0
P1 B:SVV174 4.4 12.7 1.0
N B:GLY126 4.6 11.2 1.0
N4 B:SVV174 4.7 11.8 1.0
CE1 B:PHE127 4.8 10.3 1.0
O3 B:SVV174 4.8 11.0 1.0
O B:ALA124 4.8 8.9 1.0
CA B:TYR125 4.9 11.2 1.0
CG B:TYR125 5.0 11.8 1.0
CD2 B:PHE127 5.0 10.2 1.0

Reference:

L.Esquirol, T.S.Peat, M.Wilding, J.W.Liu, N.G.French, C.J.Hartley, H.Onagi, T.Nebl, C.J.Easton, J.Newman, C.Scott. An Unexpected Vestigial Protein Complex Reveals the Evolutionary Origins of Ans-Triazine Catabolic Enzyme. J. Biol. Chem. V. 293 7880 2018.
ISSN: ESSN 1083-351X
PubMed: 29523689
DOI: 10.1074/JBC.RA118.001996
Page generated: Sat Dec 12 06:01:12 2020

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