Calcium in PDB 6c74: Crystal Structure of Murine CD300LF in Complex with Phosphocholine

The structure of Crystal Structure of Murine CD300LF in Complex with Phosphocholine, PDB code: 6c74 was solved by C.A.Nelson, D.H.Fremont, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.55 / 1.36
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	32.640, 40.058, 68.291, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 18.9

The binding sites of Calcium atom in the Crystal Structure of Murine CD300LF in Complex with Phosphocholine (pdb code 6c74). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Murine CD300LF in Complex with Phosphocholine, PDB code: 6c74:

Calcium binding site 1 out of 1 in the Crystal Structure of Murine CD300LF in Complex with Phosphocholine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Murine CD300LF in Complex with Phosphocholine within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:14.8 occ:1.00 OD1 A:ASP98 2.3 10.9 1.0 O4 A:PC201 2.3 19.4 1.0 O A:GLY96 2.3 16.6 1.0 O A:LYS94 2.3 14.1 1.0 O A:HOH423 2.4 22.8 1.0 O A:HOH419 2.4 29.4 1.0 CG A:ASP98 3.3 12.9 1.0 H A:LYS94 3.4 15.4 1.0 C A:GLY96 3.5 15.5 1.0 C A:LYS94 3.6 16.5 1.0 P1 A:PC201 3.7 17.3 1.0 OD2 A:ASP98 3.9 12.7 1.0 H A:ASP98 3.9 13.1 1.0 H A:GLY96 4.0 19.6 1.0 N A:GLY96 4.0 16.3 1.0 HA2 A:GLY95 4.1 26.9 1.0 N A:ASP98 4.1 10.9 1.0 O A:HOH347 4.1 30.2 1.0 N A:LYS94 4.1 12.9 1.0 O3 A:PC201 4.2 17.1 1.0 O1 A:PC201 4.3 22.7 1.0 O A:HOH417 4.3 33.1 1.0 C A:GLY95 4.3 17.6 1.0 CA A:GLY96 4.4 17.7 1.0 CB A:ASP98 4.4 11.4 1.0 HA A:ASP98 4.4 14.3 1.0 HG23 A:THR93 4.4 14.5 1.0 O A:HOH340 4.4 18.4 1.0 HG3 A:LYS94 4.5 19.4 1.0 HA A:LEU97 4.5 15.4 1.0 N A:GLY95 4.5 18.0 1.0 CA A:GLY95 4.5 22.4 1.0 C A:LEU97 4.5 14.1 1.0 CA A:LYS94 4.5 12.5 1.0 CA A:ASP98 4.5 11.9 1.0 N A:LEU97 4.5 13.3 1.0 HA A:THR93 4.6 11.2 1.0 HG2 A:LYS94 4.6 19.4 1.0 H22 A:PC201 4.6 36.2 1.0 HB2 A:ASP98 4.6 13.7 1.0 CA A:LEU97 4.7 12.9 1.0 HA2 A:GLY96 4.8 21.2 1.0 O A:GLY95 4.8 19.5 1.0 O2 A:PC201 4.9 20.3 1.0 CG A:LYS94 4.9 16.2 1.0 H11 A:PC201 5.0 36.8 1.0

C.A.Nelson, C.B.Wilen, Y.N.Dai, R.C.Orchard, A.S.Kim, R.A.Stegeman, L.L.Hsieh, T.J.Smith, H.W.Virgin, D.H.Fremont. Structural Basis For Murine Norovirus Engagement of Bile Acids and the CD300LF Receptor. Proc. Natl. Acad. Sci. V. 115 E9201 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30194229
DOI: 10.1073/PNAS.1805797115