Calcium in PDB 6cgu: Mouse Cadherin-6 EC1-2 Adhesive Fragment

The structure of Mouse Cadherin-6 EC1-2 Adhesive Fragment, PDB code: 6cgu was solved by J.Brasch, O.J.Harrison, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.93 / 1.90
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	114.348, 141.647, 142.195, 90.00, 90.00, 90.00
R / Rfree (%)	16.1 / 20.1

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>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Calcium atom in the Mouse Cadherin-6 EC1-2 Adhesive Fragment (pdb code 6cgu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the Mouse Cadherin-6 EC1-2 Adhesive Fragment, PDB code: 6cgu:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:29.3 occ:1.00 OE1 A:GLU66 2.3 29.9 1.0 OD1 A:ASP64 2.3 32.9 1.0 OD2 A:ASP101 2.3 32.8 1.0 OE2 A:GLU11 2.4 27.9 1.0 OE2 A:GLU12 2.4 32.3 1.0 O A:HOH563 2.4 28.7 1.0 CG A:ASP101 3.2 32.1 1.0 CG A:ASP64 3.3 34.3 1.0 OD1 A:ASP101 3.3 29.2 1.0 CD A:GLU11 3.3 29.8 1.0 CD A:GLU12 3.4 37.9 1.0 HG3 A:GLU12 3.4 36.8 1.0 H A:GLU66 3.5 37.0 1.0 CD A:GLU66 3.5 29.5 1.0 HA A:ASP64 3.5 38.5 1.0 HG2 A:GLU12 3.6 36.8 1.0 HD21 A:ASN102 3.6 34.9 1.0 OE1 A:GLU11 3.6 26.0 1.0 H A:ARG65 3.6 37.4 1.0 HB2 A:GLU66 3.7 40.0 1.0 CG A:GLU12 3.7 30.7 1.0 OD2 A:ASP64 4.0 35.6 1.0 CA A:CA302 4.0 25.9 1.0 CB A:ASP64 4.1 33.5 1.0 N A:ARG65 4.1 31.2 1.0 CA A:ASP64 4.2 32.1 1.0 HB2 A:ASP64 4.2 40.2 1.0 O A:HOH572 4.3 65.9 1.0 ND2 A:ASN102 4.3 29.1 1.0 O A:HOH426 4.3 38.0 1.0 OE2 A:GLU66 4.3 28.8 1.0 N A:GLU66 4.3 30.8 1.0 O A:HOH487 4.4 33.2 1.0 HB2 A:GLU11 4.4 31.5 1.0 CG A:GLU66 4.4 31.2 1.0 CB A:GLU66 4.4 33.3 1.0 HD22 A:ASN102 4.4 34.9 1.0 C A:ASP64 4.5 31.8 1.0 OE1 A:GLU12 4.5 35.2 1.0 CG A:GLU11 4.6 26.0 1.0 HG2 A:GLU66 4.6 37.4 1.0 O A:HOH421 4.6 35.3 1.0 CB A:ASP101 4.6 29.0 1.0 HB3 A:ARG65 4.6 32.8 1.0 HG3 A:GLU11 4.7 31.2 1.0 HB2 A:ASP101 4.7 34.8 1.0 HG12 A:ILE99 4.9 35.0 1.0 HB3 A:ASP101 5.0 34.8 1.0

Calcium binding site 2 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:25.9 occ:1.00 OD1 A:ASP98 2.2 27.6 1.0 OE1 A:GLU11 2.4 26.0 1.0 OD1 A:ASP134 2.4 28.3 1.0 OD1 A:ASP101 2.4 29.2 1.0 O A:ILE99 2.4 25.9 1.0 OE2 A:GLU66 2.4 28.8 1.0 OE1 A:GLU66 2.9 29.9 1.0 CD A:GLU66 3.0 29.5 1.0 H A:ILE99 3.3 29.9 1.0 HD22 A:ASN102 3.3 34.9 1.0 CG A:ASP98 3.3 27.0 1.0 H A:ASP101 3.3 34.8 1.0 CG A:ASP134 3.4 30.2 1.0 CD A:GLU11 3.4 29.8 1.0 HA A:ASP134 3.5 36.1 1.0 HE A:ARG65 3.5 34.1 1.0 CG A:ASP101 3.5 32.1 1.0 C A:ILE99 3.6 24.9 1.0 OE2 A:GLU11 3.8 27.9 1.0 N A:ILE99 3.8 24.9 1.0 OD2 A:ASP98 3.9 26.1 1.0 HB3 A:ASP134 3.9 37.0 1.0 HD21 A:ASN102 3.9 34.9 1.0 ND2 A:ASN102 3.9 29.1 1.0 HA A:ASP98 3.9 31.2 1.0 CA A:CA301 4.0 29.3 1.0 HH21 A:ARG65 4.0 43.8 1.0 CB A:ASP134 4.0 30.9 1.0 OD2 A:ASP101 4.1 32.8 1.0 N A:ASP101 4.1 29.0 1.0 HB3 A:ARG65 4.1 32.8 1.0 HG12 A:ILE99 4.2 35.0 1.0 HG13 A:ILE99 4.2 35.0 1.0 CA A:ASP134 4.2 30.1 1.0 HA A:ASN100 4.2 32.2 1.0 NE A:ARG65 4.4 28.4 1.0 CA A:ILE99 4.4 24.9 1.0 CG A:GLU66 4.4 31.2 1.0 OD2 A:ASP134 4.4 27.0 1.0 CB A:ASP98 4.4 27.2 1.0 CA A:ASP98 4.5 26.0 1.0 HG2 A:GLU66 4.6 37.4 1.0 N A:ASN100 4.6 27.5 1.0 H A:ASP135 4.6 35.9 1.0 CG1 A:ILE99 4.6 29.2 1.0 C A:ASP98 4.7 26.9 1.0 CB A:ASP101 4.7 29.0 1.0 HG3 A:GLU66 4.7 37.4 1.0 CG A:GLU11 4.7 26.0 1.0 H A:ASN102 4.8 32.6 1.0 HG2 A:GLU11 4.8 31.2 1.0 CA A:ASN100 4.8 26.9 1.0 NH2 A:ARG65 4.8 36.5 1.0 CA A:ASP101 4.8 30.5 1.0 HB2 A:ASP98 4.8 32.6 1.0 H A:GLU66 4.9 37.0 1.0 HD3 A:ARG65 4.9 36.2 1.0 HB3 A:ASP101 4.9 34.8 1.0 C A:ASN100 5.0 27.9 1.0 HB2 A:ASP134 5.0 37.0 1.0

Calcium binding site 3 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:25.9 occ:1.00 O A:SER141 2.3 26.0 1.0 O A:ASN102 2.4 30.5 1.0 OD2 A:ASP134 2.4 27.0 1.0 OD1 A:ASN100 2.4 25.9 1.0 OD2 A:ASP187 2.4 25.1 1.0 OD2 A:ASP132 2.4 27.4 1.0 OD1 A:ASP132 2.6 26.9 1.0 CG A:ASP132 2.8 26.5 1.0 HB2 A:ASP134 3.3 37.0 1.0 CG A:ASP187 3.4 27.3 1.0 CG A:ASP134 3.5 30.2 1.0 C A:SER141 3.5 26.3 1.0 H A:ASN102 3.5 32.6 1.0 C A:ASN102 3.6 28.1 1.0 CG A:ASN100 3.6 29.9 1.0 HB2 A:ASP187 3.6 34.1 1.0 HB3 A:ASP187 3.6 34.1 1.0 HA A:ALA142 3.8 36.9 1.0 CB A:ASP187 3.8 28.4 1.0 HD12 A:LEU195 3.8 37.1 1.0 CB A:ASP134 3.9 30.9 1.0 HB3 A:SER141 3.9 35.2 1.0 HB2 A:ASN102 3.9 35.5 1.0 HD21 A:ASN100 4.0 33.1 1.0 HD3 A:PRO104 4.1 30.3 1.0 H A:ASP134 4.1 35.4 1.0 HA A:GLU103 4.1 40.9 0.4 N A:ASN102 4.2 27.2 1.0 HA A:SER141 4.2 34.0 1.0 ND2 A:ASN100 4.2 27.6 1.0 HA A:ASN100 4.2 32.2 1.0 HA A:GLU103 4.3 40.5 0.6 CA A:ASN102 4.3 27.3 1.0 CA A:SER141 4.3 28.3 1.0 CB A:ASP132 4.3 26.9 1.0 HB2 A:LEU195 4.4 30.3 1.0 OD1 A:ASP187 4.4 25.6 1.0 HB3 A:ASP134 4.4 37.0 1.0 N A:ALA142 4.4 29.4 1.0 CA A:ALA142 4.5 30.8 1.0 CB A:ASN102 4.5 29.5 1.0 OD1 A:ASP134 4.5 28.3 1.0 CB A:SER141 4.6 29.3 1.0 N A:GLU103 4.6 28.4 1.0 HB2 A:ASP132 4.7 32.3 1.0 HB3 A:ASP132 4.7 32.3 1.0 CB A:ASN100 4.7 27.5 1.0 CA A:GLU103 4.7 34.1 0.4 CD1 A:LEU195 4.8 30.9 1.0 CA A:GLU103 4.8 33.7 0.6 CA A:ASN100 4.8 26.9 1.0 HB3 A:ASN102 4.8 35.5 1.0 N A:ASP134 4.8 29.5 1.0 HG3 A:PRO104 4.9 31.7 1.0 HB2 A:SER141 4.9 35.2 1.0 H A:ASP101 4.9 34.8 1.0 HB2 A:ALA142 4.9 38.6 1.0 CD A:PRO104 4.9 25.2 1.0 C A:GLU103 5.0 27.3 1.0 C A:ASN100 5.0 27.9 1.0

Calcium binding site 4 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:22.0 occ:1.00 OD1 B:ASN100 2.3 22.0 1.0 O B:ASN102 2.4 23.1 1.0 O B:SER141 2.4 23.1 1.0 OD2 B:ASP134 2.4 20.9 1.0 OD2 B:ASP187 2.4 23.1 1.0 OD2 B:ASP132 2.4 21.1 1.0 OD1 B:ASP132 2.5 22.6 1.0 CG B:ASP132 2.8 23.5 1.0 HB2 B:ASP134 3.3 25.3 1.0 CG B:ASP187 3.4 22.8 1.0 CG B:ASN100 3.5 20.5 1.0 CG B:ASP134 3.5 23.7 1.0 H B:ASN102 3.5 25.1 1.0 C B:ASN102 3.6 24.3 1.0 C B:SER141 3.6 22.8 1.0 HB3 B:ASP187 3.6 26.4 1.0 HB2 B:ASP187 3.6 26.4 1.0 HD21 B:ASN100 3.8 33.2 1.0 HD12 B:LEU195 3.8 30.4 1.0 HA B:ALA142 3.8 26.2 1.0 CB B:ASP187 3.8 22.0 1.0 HB2 B:ASN102 3.8 29.4 1.0 HB3 B:SER141 3.9 25.8 1.0 CB B:ASP134 3.9 21.1 1.0 ND2 B:ASN100 4.0 27.7 1.0 H B:ASP134 4.1 25.0 1.0 HD3 B:PRO104 4.1 22.6 1.0 HA B:GLU103 4.2 26.9 1.0 N B:ASN102 4.2 20.9 1.0 HA B:ASN100 4.2 26.2 1.0 HA B:SER141 4.2 24.7 1.0 HB2 B:LEU195 4.3 21.1 1.0 CA B:ASN102 4.3 21.2 1.0 CB B:ASP132 4.3 21.0 1.0 CA B:SER141 4.4 20.6 1.0 OD1 B:ASP187 4.4 21.6 1.0 CB B:ASN102 4.5 24.5 1.0 HB3 B:ASP134 4.5 25.3 1.0 N B:ALA142 4.5 22.4 1.0 CB B:SER141 4.6 21.5 1.0 OD1 B:ASP134 4.6 21.6 1.0 CA B:ALA142 4.6 21.9 1.0 N B:GLU103 4.6 21.0 1.0 CB B:ASN100 4.7 22.6 1.0 HB3 B:ASP132 4.7 25.1 1.0 HB2 B:ASP132 4.7 25.1 1.0 HB3 B:ASN102 4.7 29.4 1.0 CA B:GLU103 4.7 22.4 1.0 CD1 B:LEU195 4.7 25.3 1.0 CA B:ASN100 4.8 21.8 1.0 N B:ASP134 4.8 20.8 1.0 HG3 B:PRO104 4.9 23.7 1.0 HD22 B:ASN100 4.9 33.2 1.0 C B:GLU103 4.9 18.7 1.0 HB2 B:SER141 4.9 25.8 1.0 CD B:PRO104 4.9 18.8 1.0 H B:ASP101 5.0 34.0 1.0 C B:ASN100 5.0 24.3 1.0

Calcium binding site 5 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca302 b:20.7 occ:1.00 OD1 B:ASP98 2.2 22.9 1.0 OE1 B:GLU11 2.3 22.5 1.0 OD1 B:ASP134 2.3 21.6 1.0 O B:ILE99 2.4 23.7 1.0 OD1 B:ASP101 2.4 24.4 1.0 OE2 B:GLU66 2.4 24.2 1.0 OE1 B:GLU66 2.8 24.3 1.0 CD B:GLU66 2.9 26.2 1.0 H B:ILE99 3.2 26.6 1.0 HD22 B:ASN102 3.3 31.3 1.0 H B:ASP101 3.3 34.0 1.0 CG B:ASP98 3.3 23.0 1.0 CG B:ASP134 3.4 23.7 1.0 CD B:GLU11 3.4 22.2 1.0 HA B:ASP134 3.5 26.1 1.0 CG B:ASP101 3.5 24.1 1.0 HE B:ARG65 3.5 28.9 1.0 C B:ILE99 3.6 23.5 1.0 HB3 B:ASP134 3.8 25.3 1.0 HD21 B:ASN102 3.8 31.3 1.0 N B:ILE99 3.8 22.1 1.0 OE2 B:GLU11 3.8 22.6 1.0 ND2 B:ASN102 3.9 26.1 1.0 OD2 B:ASP98 3.9 23.3 1.0 HA B:ASP98 4.0 25.7 1.0 CB B:ASP134 4.0 21.1 1.0 CA B:CA303 4.0 23.0 1.0 N B:ASP101 4.1 28.3 1.0 OD2 B:ASP101 4.1 25.2 1.0 HB3 B:ARG65 4.1 26.9 1.0 HG12 B:ILE99 4.2 27.7 1.0 HG13 B:ILE99 4.2 27.7 1.0 HA B:ASN100 4.2 26.2 1.0 HH21 B:ARG65 4.2 29.0 1.0 CA B:ASP134 4.2 21.7 1.0 CA B:ILE99 4.3 22.7 1.0 OD2 B:ASP134 4.4 20.9 1.0 CG B:GLU66 4.4 25.2 1.0 NE B:ARG65 4.4 24.1 1.0 H B:ASP135 4.5 28.3 1.0 CB B:ASP98 4.5 22.0 1.0 CA B:ASP98 4.6 21.4 1.0 HG2 B:GLU66 4.6 30.3 1.0 N B:ASN100 4.6 23.3 1.0 CG1 B:ILE99 4.6 23.1 1.0 CB B:ASP101 4.7 23.3 1.0 C B:ASP98 4.7 21.8 1.0 HG3 B:GLU66 4.7 30.3 1.0 CG B:GLU11 4.7 21.6 1.0 HG2 B:GLU11 4.7 25.9 1.0 CA B:ASN100 4.7 21.8 1.0 H B:ASN102 4.8 25.1 1.0 CA B:ASP101 4.8 23.3 1.0 HD3 B:ARG65 4.9 27.9 1.0 H B:GLU66 4.9 28.2 1.0 HB2 B:ASP98 4.9 26.4 1.0 HB3 B:ASP101 4.9 28.0 1.0 HB2 B:ASP134 4.9 25.3 1.0 C B:ASN100 4.9 24.3 1.0 NH2 B:ARG65 4.9 24.2 1.0

Calcium binding site 6 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca303 b:23.0 occ:1.00 OE1 B:GLU66 2.3 24.3 1.0 OD2 B:ASP101 2.3 25.2 1.0 OD1 B:ASP64 2.4 26.9 1.0 OE2 B:GLU11 2.4 22.6 1.0 OE2 B:GLU12 2.4 24.0 1.0 O B:HOH621 2.5 21.5 1.0 CG B:ASP101 3.2 24.1 1.0 OD1 B:ASP101 3.3 24.4 1.0 CG B:ASP64 3.3 30.6 1.0 CD B:GLU11 3.3 22.2 1.0 HG3 B:GLU12 3.4 27.8 1.0 CD B:GLU12 3.4 27.6 1.0 H B:GLU66 3.5 28.2 1.0 CD B:GLU66 3.5 26.2 1.0 HG2 B:GLU12 3.5 27.8 1.0 HD21 B:ASN102 3.6 31.3 1.0 HA B:ASP64 3.6 27.3 1.0 OE1 B:GLU11 3.6 22.5 1.0 HB2 B:GLU66 3.6 31.4 1.0 CG B:GLU12 3.7 23.1 1.0 H B:ARG65 3.7 26.6 1.0 CA B:CA302 4.0 20.7 1.0 OD2 B:ASP64 4.0 26.1 1.0 CB B:ASP64 4.2 29.8 1.0 N B:ARG65 4.2 22.1 1.0 CA B:ASP64 4.2 22.7 1.0 ND2 B:ASN102 4.3 26.1 1.0 HB2 B:ASP64 4.3 35.8 1.0 O B:HOH421 4.3 27.8 1.0 N B:GLU66 4.4 23.5 1.0 OE2 B:GLU66 4.4 24.2 1.0 HD22 B:ASN102 4.4 31.3 1.0 HB2 B:GLU11 4.4 25.4 1.0 O B:HOH637 4.4 85.5 1.0 CB B:GLU66 4.4 26.2 1.0 O B:HOH568 4.4 25.8 1.0 CG B:GLU66 4.5 25.2 1.0 C B:ASP64 4.5 22.5 1.0 OE1 B:GLU12 4.5 27.5 1.0 CG B:GLU11 4.5 21.6 1.0 O B:HOH465 4.6 27.0 1.0 CB B:ASP101 4.6 23.3 1.0 HB3 B:ARG65 4.6 26.9 1.0 HG2 B:GLU66 4.6 30.3 1.0 HG3 B:GLU11 4.7 25.9 1.0 HB2 B:ASP101 4.7 28.0 1.0 HG12 B:ILE99 4.9 27.7 1.0 HB3 B:ASP101 5.0 28.0 1.0

Calcium binding site 7 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca301 b:66.1 occ:1.00 O C:HOH606 2.6 59.9 1.0 O C:ARG173 2.7 65.6 1.0 O C:ASN170 2.9 49.2 1.0 OD1 C:ASN170 3.2 44.9 1.0 HD21 C:ASN170 3.3 49.8 1.0 H C:ASN175 3.4 0.3 1.0 HA C:ASN175 3.4 0.0 1.0 O C:HOH507 3.4 49.4 1.0 HB2 C:ASN175 3.4 0.5 1.0 CG C:ASN170 3.5 38.6 1.0 N C:ASN175 3.5 93.6 1.0 ND2 C:ASN170 3.6 41.5 1.0 C C:ARG173 3.7 59.6 1.0 HB3 C:ARG173 3.7 79.8 1.0 O C:HOH533 3.7 57.5 1.0 CA C:ASN175 3.8 92.5 1.0 C C:ASN170 3.9 54.0 1.0 H C:ARG173 3.9 55.7 1.0 CB C:ASN175 4.1 92.1 1.0 C C:GLU174 4.1 97.4 1.0 HD22 C:ASN170 4.2 49.8 1.0 HE C:ARG173 4.2 61.3 1.0 HA C:ASN170 4.2 48.6 1.0 OD1 C:ASN175 4.3 97.1 1.0 CB C:ARG173 4.4 66.5 1.0 CA C:ARG173 4.4 45.2 1.0 HA C:GLU174 4.5 0.9 1.0 CA C:ASN170 4.5 40.5 1.0 N C:GLU174 4.5 83.5 1.0 HG2 C:ARG173 4.5 88.0 1.0 N C:ARG173 4.6 46.4 1.0 HA C:MET171 4.6 59.8 1.0 CB C:ASN170 4.6 38.4 1.0 CA C:GLU174 4.6 0.8 1.0 CG C:ASN175 4.7 0.2 1.0 O C:GLU174 4.7 97.0 1.0 HH21 C:ARG173 4.9 64.4 1.0 HB3 C:ASN175 4.9 0.5 1.0 N C:MET171 4.9 45.6 1.0 NE C:ARG173 5.0 51.1 1.0

Calcium binding site 8 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca302 b:23.9 occ:1.00 OD1 C:ASP98 2.3 26.7 1.0 OD1 C:ASP134 2.3 24.6 1.0 OE1 C:GLU11 2.3 24.9 1.0 OD1 C:ASP101 2.4 26.4 1.0 O C:ILE99 2.4 27.9 1.0 OE2 C:GLU66 2.5 26.8 1.0 OE1 C:GLU66 2.8 27.3 1.0 CD C:GLU66 2.9 27.8 1.0 H C:ILE99 3.2 28.8 1.0 HD22 C:ASN102 3.3 36.4 1.0 H C:ASP101 3.3 28.0 1.0 CG C:ASP98 3.4 27.8 1.0 CG C:ASP134 3.4 29.5 1.0 CD C:GLU11 3.4 27.3 1.0 HA C:ASP134 3.5 30.9 1.0 HE C:ARG65 3.5 33.6 1.0 CG C:ASP101 3.5 26.7 1.0 C C:ILE99 3.6 25.4 1.0 HB3 C:ASP134 3.8 32.2 1.0 N C:ILE99 3.8 24.0 1.0 OE2 C:GLU11 3.9 26.6 1.0 HD21 C:ASN102 3.9 36.4 1.0 ND2 C:ASN102 3.9 30.3 1.0 HA C:ASP98 3.9 29.0 1.0 OD2 C:ASP98 4.0 25.2 1.0 CB C:ASP134 4.0 26.9 1.0 CA C:CA303 4.0 28.1 1.0 N C:ASP101 4.1 23.4 1.0 OD2 C:ASP101 4.1 27.7 1.0 HB3 C:ARG65 4.1 36.9 1.0 HG13 C:ILE99 4.1 30.3 1.0 HH21 C:ARG65 4.1 34.2 1.0 HG12 C:ILE99 4.2 30.3 1.0 CA C:ASP134 4.2 25.7 1.0 HA C:ASN100 4.2 28.4 1.0 NE C:ARG65 4.4 28.0 1.0 CA C:ILE99 4.4 24.5 1.0 CG C:GLU66 4.4 28.6 1.0 OD2 C:ASP134 4.4 23.4 1.0 CB C:ASP98 4.5 23.8 1.0 CA C:ASP98 4.5 24.1 1.0 CG1 C:ILE99 4.6 25.3 1.0 HG2 C:GLU66 4.6 34.3 1.0 H C:ASP135 4.6 32.6 1.0 N C:ASN100 4.6 23.8 1.0 CB C:ASP101 4.7 26.8 1.0 C C:ASP98 4.7 23.4 1.0 CG C:GLU11 4.7 23.9 1.0 HG2 C:GLU11 4.7 28.7 1.0 HG3 C:GLU66 4.7 34.3 1.0 H C:ASN102 4.8 29.8 1.0 CA C:ASN100 4.8 23.7 1.0 CA C:ASP101 4.8 23.9 1.0 HD3 C:ARG65 4.8 34.6 1.0 H C:GLU66 4.9 32.3 1.0 NH2 C:ARG65 4.9 28.5 1.0 HB3 C:ASP101 4.9 32.2 1.0 HB2 C:ASP98 4.9 28.5 1.0 HB2 C:ASP134 4.9 32.2 1.0 C C:ASN100 4.9 27.8 1.0

Calcium binding site 9 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca303 b:28.1 occ:1.00 OD1 C:ASP64 2.3 28.8 1.0 OD2 C:ASP101 2.3 27.7 1.0 OE1 C:GLU66 2.3 27.3 1.0 OE2 C:GLU11 2.4 26.6 1.0 OE2 C:GLU12 2.4 27.7 1.0 O C:HOH617 2.5 26.8 1.0 CG C:ASP101 3.2 26.7 1.0 CG C:ASP64 3.3 28.3 1.0 CD C:GLU11 3.3 27.3 1.0 OD1 C:ASP101 3.3 26.4 1.0 CD C:GLU12 3.4 45.0 1.0 HG3 C:GLU12 3.4 34.2 1.0 H C:GLU66 3.5 32.3 1.0 HA C:ASP64 3.5 31.6 1.0 HG2 C:GLU12 3.6 34.2 1.0 HB2 C:GLU66 3.6 34.8 1.0 CD C:GLU66 3.6 27.8 1.0 HD21 C:ASN102 3.6 36.4 1.0 OE1 C:GLU11 3.6 24.9 1.0 CG C:GLU12 3.7 28.5 1.0 H C:ARG65 3.8 34.3 1.0 OD2 C:ASP64 4.0 29.6 1.0 CA C:CA302 4.0 23.9 1.0 CB C:ASP64 4.2 28.4 1.0 CA C:ASP64 4.2 26.3 1.0 N C:ARG65 4.2 28.6 1.0 O C:HOH597 4.3 63.5 1.0 ND2 C:ASN102 4.3 30.3 1.0 HB2 C:ASP64 4.3 34.0 1.0 N C:GLU66 4.3 26.9 1.0 O C:HOH435 4.3 33.2 1.0 CB C:GLU66 4.4 29.0 1.0 HD22 C:ASN102 4.4 36.4 1.0 HB2 C:GLU11 4.4 33.3 1.0 OE2 C:GLU66 4.4 26.8 1.0 O C:HOH515 4.4 31.1 1.0 CG C:GLU66 4.5 28.6 1.0 CG C:GLU11 4.5 23.9 1.0 C C:ASP64 4.5 25.9 1.0 OE1 C:GLU12 4.5 32.3 1.0 CB C:ASP101 4.6 26.8 1.0 HG3 C:GLU11 4.6 28.7 1.0 HB3 C:ARG65 4.6 36.9 1.0 HG2 C:GLU66 4.6 34.3 1.0 O C:HOH449 4.6 33.1 1.0 HB2 C:ASP101 4.8 32.2 1.0 HG12 C:ILE99 4.9 30.3 1.0 HB3 C:ASP101 5.0 32.2 1.0

Calcium binding site 10 out of 14 in the Mouse Cadherin-6 EC1-2 Adhesive Fragment


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Mouse Cadherin-6 EC1-2 Adhesive Fragment within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca304 b:25.1 occ:1.00 OD1 C:ASN100 2.3 23.9 1.0 OD2 C:ASP134 2.3 23.4 1.0 O C:SER141 2.3 24.0 1.0 O C:ASN102 2.4 24.6 1.0 OD2 C:ASP132 2.4 26.7 1.0 OD2 C:ASP187 2.4 27.9 1.0 OD1 C:ASP132 2.5 27.0 1.0 CG C:ASP132 2.8 27.0 1.0 HB2 C:ASP134 3.3 32.2 1.0 CG C:ASP187 3.4 28.9 1.0 CG C:ASP134 3.4 29.5 1.0 CG C:ASN100 3.5 25.4 1.0 H C:ASN102 3.5 29.8 1.0 C C:SER141 3.5 27.2 1.0 C C:ASN102 3.6 25.0 1.0 HB2 C:ASP187 3.6 31.6 1.0 HB3 C:ASP187 3.7 31.6 1.0 HD12 C:LEU195 3.7 32.7 1.0 HA C:ALA142 3.8 36.7 1.0 CB C:ASP187 3.8 26.3 1.0 CB C:ASP134 3.9 26.9 1.0 HD21 C:ASN100 3.9 33.4 1.0 HB3 C:SER141 3.9 31.5 1.0 HB2 C:ASN102 3.9 33.7 1.0 H C:ASP134 4.1 31.5 1.0 HA C:GLU103 4.1 34.9 1.0 HD3 C:PRO104 4.1 29.5 1.0 ND2 C:ASN100 4.1 27.8 1.0 HA C:ASN100 4.2 28.4 1.0 HA C:SER141 4.2 31.3 1.0 N C:ASN102 4.2 24.8 1.0 CB C:ASP132 4.3 23.5 1.0 CA C:ASN102 4.3 24.3 1.0 CA C:SER141 4.4 26.1 1.0 HB2 C:LEU195 4.4 31.8 1.0 OD1 C:ASP187 4.4 25.5 1.0 HB3 C:ASP134 4.4 32.2 1.0 N C:ALA142 4.5 27.3 1.0 OD1 C:ASP134 4.5 24.6 1.0 CB C:ASN102 4.5 28.1 1.0 CB C:SER141 4.6 26.2 1.0 CA C:ALA142 4.6 30.6 1.0 N C:GLU103 4.6 26.3 1.0 CD1 C:LEU195 4.7 27.2 1.0 HB3 C:ASP132 4.7 28.1 1.0 CB C:ASN100 4.7 24.9 1.0 HB2 C:ASP132 4.7 28.1 1.0 CA C:GLU103 4.7 29.1 1.0 CA C:ASN100 4.8 23.7 1.0 N C:ASP134 4.8 26.2 1.0 HB3 C:ASN102 4.8 33.7 1.0 HG3 C:PRO104 4.8 31.9 1.0 H C:ASP101 4.9 28.0 1.0 HB2 C:SER141 4.9 31.5 1.0 CD C:PRO104 4.9 24.6 1.0 HB2 C:ALA142 4.9 39.7 1.0 C C:GLU103 5.0 27.1 1.0 HB2 C:ASN100 5.0 29.9 1.0

J.Brasch, P.S.Katsamba, O.J.Harrison, G.Ahlsen, R.B.Troyanovsky, I.Indra, A.Kaczynska, B.Kaeser, S.Troyanovsky, B.Honig, L.Shapiro. Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior. Cell Rep V. 23 1840 2018.
ISSN: ESSN 2211-1247
PubMed: 29742438
DOI: 10.1016/J.CELREP.2018.04.012