Calcium in PDB 6dfq: Mouse Diabetogenic Tcr I.29

Protein crystallography data

The structure of Mouse Diabetogenic Tcr I.29, PDB code: 6dfq was solved by Y.Wang, S.Dai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.60 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.107, 117.629, 234.774, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 25.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Mouse Diabetogenic Tcr I.29 (pdb code 6dfq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Mouse Diabetogenic Tcr I.29, PDB code: 6dfq:

Calcium binding site 1 out of 1 in 6dfq

Go back to Calcium Binding Sites List in 6dfq
Calcium binding site 1 out of 1 in the Mouse Diabetogenic Tcr I.29


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Mouse Diabetogenic Tcr I.29 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca301

b:69.7
occ:1.00
O C:PRO121 2.7 66.9 1.0
OD1 C:ASN120 2.8 80.8 1.0
O C:HOH419 3.1 35.8 1.0
C C:PRO121 3.7 49.2 1.0
CG C:ASN120 4.0 85.5 1.0
N C:PRO121 4.2 45.4 1.0
CA C:PRO121 4.4 47.1 1.0
C C:ASN120 4.5 52.8 1.0
CB C:PRO121 4.5 46.1 1.0
CD C:PRO121 4.6 46.3 1.0
N C:ASP122 4.7 45.1 1.0
ND2 C:ASN120 4.8 84.5 1.0
O C:ASN120 4.9 55.9 1.0
CA C:ASP122 4.9 46.2 1.0
CA C:ASN120 5.0 69.6 1.0

Reference:

Y.Wang, T.Sosinowski, A.Novikov, F.Crawford, J.White, N.Jin, Z.Liu, J.Zou, D.Neau, H.W.Davidson, M.Nakayama, W.W.Kwok, L.Gapin, P.Marrack, J.W.Kappler, S.Dai. How C-Terminal Additions to Insulin B-Chain Fragments Create Superagonists For T Cells in Mouse and Human Type 1 Diabetes. Sci Immunol V. 4 2019.
ISSN: ESSN 2470-9468
PubMed: 30952805
DOI: 10.1126/SCIIMMUNOL.AAV7517
Page generated: Sat Dec 12 06:03:21 2020

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