Calcium in PDB 6dmw: Calmodulin-Bound Full-Length RBTRPV5

The binding sites of Calcium atom in the Calmodulin-Bound Full-Length RBTRPV5 (pdb code 6dmw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Calmodulin-Bound Full-Length RBTRPV5, PDB code: 6dmw:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Calmodulin-Bound Full-Length RBTRPV5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calmodulin-Bound Full-Length RBTRPV5 within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca201 b:0.8 occ:1.01 OE2 E:GLU32 2.3 0.7 1.0 OD1 E:ASP25 2.5 0.3 1.0 O E:THR27 2.6 0.0 1.0 CD E:GLU32 2.8 0.7 1.0 OE1 E:GLU32 2.9 0.7 1.0 OD1 E:ASP21 3.0 0.1 1.0 OD1 E:ASP23 3.0 0.0 1.0 OD2 E:ASP25 3.1 0.3 1.0 OG1 E:THR27 3.1 0.0 1.0 CG E:ASP25 3.2 0.3 1.0 C E:THR27 3.2 0.0 1.0 CG E:ASP23 3.8 0.0 1.0 OD2 E:ASP23 3.9 0.0 1.0 CG E:GLU32 3.9 0.7 1.0 N E:ILE28 3.9 0.2 1.0 CG E:ASP21 4.0 0.1 1.0 N E:THR29 4.0 0.5 1.0 CA E:THR27 4.0 0.0 1.0 CA E:ILE28 4.1 0.2 1.0 N E:THR27 4.1 0.0 1.0 CB E:THR27 4.1 0.0 1.0 C E:ILE28 4.5 0.2 1.0 CG2 E:THR29 4.5 0.5 1.0 OD2 E:ASP21 4.6 0.1 1.0 CB E:ASP25 4.6 0.3 1.0 CB E:THR29 4.8 0.5 1.0 CA E:ASP21 4.8 0.1 1.0 N E:ASP25 4.8 0.3 1.0 N E:LYS22 4.9 0.7 1.0 CB E:ASP21 4.9 0.1 1.0 CB E:GLU32 4.9 0.7 1.0

Calcium binding site 2 out of 3 in the Calmodulin-Bound Full-Length RBTRPV5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Calmodulin-Bound Full-Length RBTRPV5 within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca202 b:0.2 occ:1.01 OE2 E:GLU105 2.3 0.4 1.0 OD1 E:ASP96 2.5 0.4 1.0 O E:TYR100 2.5 0.5 1.0 OD1 E:ASN98 2.7 0.9 1.0 OD1 E:ASP94 2.7 0.1 1.0 OE1 E:GLU105 2.8 0.4 1.0 ND2 E:ASN98 2.8 0.9 1.0 CD E:GLU105 2.8 0.4 1.0 OD2 E:ASP96 2.9 0.4 1.0 CG E:ASP96 3.0 0.4 1.0 CG E:ASN98 3.1 0.9 1.0 C E:TYR100 3.7 0.5 1.0 CG E:ASP94 3.8 0.1 1.0 CG E:GLU105 4.2 0.4 1.0 OD2 E:ASP94 4.2 0.1 1.0 N E:SER102 4.2 0.2 1.0 CA E:ILE101 4.3 0.7 1.0 N E:ILE101 4.4 0.7 1.0 CB E:ASP96 4.5 0.4 1.0 CB E:ASN98 4.5 0.9 1.0 N E:ASP96 4.7 0.4 1.0 C E:ILE101 4.7 0.7 1.0 CA E:TYR100 4.7 0.5 1.0 N E:TYR100 4.7 0.5 1.0 OG E:SER102 4.9 0.2 1.0 N E:LYS95 4.9 0.7 1.0 N E:ASN98 4.9 0.9 1.0 CB E:SER102 4.9 0.2 1.0

Calcium binding site 3 out of 3 in the Calmodulin-Bound Full-Length RBTRPV5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Calmodulin-Bound Full-Length RBTRPV5 within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca203 b:0.8 occ:1.01 OE2 E:GLU141 2.5 0.2 1.0 O E:GLN136 2.5 0.9 1.0 OD1 E:ASP134 2.5 1.0 1.0 OD1 E:ASP130 2.6 0.7 1.0 OE1 E:GLU141 2.6 0.2 1.0 OD1 E:ASP132 2.7 0.9 1.0 CD E:GLU141 2.8 0.2 1.0 CG E:ASP134 3.3 1.0 1.0 OD2 E:ASP134 3.4 1.0 1.0 C E:GLN136 3.4 0.9 1.0 CG E:ASP130 3.5 0.7 1.0 CG E:ASP132 3.7 0.9 1.0 OD2 E:ASP132 4.0 0.9 1.0 CG E:GLU141 4.1 0.2 1.0 CA E:VAL137 4.1 0.8 1.0 N E:VAL137 4.1 0.8 1.0 OD2 E:ASP130 4.1 0.7 1.0 CA E:ASP130 4.2 0.7 1.0 CB E:ASP130 4.4 0.7 1.0 CA E:GLN136 4.4 0.9 1.0 N E:GLN136 4.4 0.9 1.0 N E:ILE131 4.6 0.0 1.0 CB E:ASP134 4.6 1.0 1.0 N E:ASP134 4.6 1.0 1.0 CB E:GLN136 4.6 0.9 1.0 N E:ASN138 4.7 0.1 1.0 N E:ASP132 4.8 0.9 1.0 C E:ASP130 4.8 0.7 1.0 C E:VAL137 4.8 0.8 1.0 N E:GLY133 4.9 0.0 1.0 CB E:GLU141 4.9 0.2 1.0

T.E.T.Hughes, R.A.Pumroy, A.T.Yazici, M.A.Kasimova, E.C.Fluck, K.W.Huynh, A.Samanta, S.K.Molugu, Z.H.Zhou, V.Carnevale, T.Rohacs, V.Y.Moiseenkova-Bell. Structural Insights on TRPV5 Gating By Endogenous Modulators. Nat Commun V. 9 4198 2018.
ISSN: ESSN 2041-1723
PubMed: 30305626
DOI: 10.1038/S41467-018-06753-6