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Calcium in PDB 6dnf: Cryo-Em Structure of the Mitochondrial Calcium Uniporter Mcu From the Fungus Cyphellophora Europaea

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of the Mitochondrial Calcium Uniporter Mcu From the Fungus Cyphellophora Europaea (pdb code 6dnf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Cryo-Em Structure of the Mitochondrial Calcium Uniporter Mcu From the Fungus Cyphellophora Europaea, PDB code: 6dnf:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 6dnf

Go back to Calcium Binding Sites List in 6dnf
Calcium binding site 1 out of 3 in the Cryo-Em Structure of the Mitochondrial Calcium Uniporter Mcu From the Fungus Cyphellophora Europaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of the Mitochondrial Calcium Uniporter Mcu From the Fungus Cyphellophora Europaea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:89.7
occ:1.00
OD1 B:ASP225 3.8 0.1 1.0
OD1 D:ASP225 3.8 0.1 1.0
OD1 C:ASP225 3.8 0.3 1.0
OD1 A:ASP225 3.8 0.4 1.0
CG D:ASP225 4.7 0.1 1.0
CG B:ASP225 4.8 0.1 1.0
CG C:ASP225 4.8 0.3 1.0
CG A:ASP225 4.8 0.4 1.0

Calcium binding site 2 out of 3 in 6dnf

Go back to Calcium Binding Sites List in 6dnf
Calcium binding site 2 out of 3 in the Cryo-Em Structure of the Mitochondrial Calcium Uniporter Mcu From the Fungus Cyphellophora Europaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of the Mitochondrial Calcium Uniporter Mcu From the Fungus Cyphellophora Europaea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:0.8
occ:1.00
OE2 B:GLU228 2.3 0.1 1.0
OE2 A:GLU228 2.4 0.6 1.0
OE2 C:GLU228 2.4 0.1 1.0
OE2 D:GLU228 2.4 0.4 1.0
OE1 C:GLU228 2.7 0.1 1.0
OE1 A:GLU228 2.7 0.6 1.0
CD A:GLU228 2.8 0.6 1.0
CD C:GLU228 2.8 0.1 1.0
CD B:GLU228 2.9 0.1 1.0
OE1 B:GLU228 3.0 0.1 1.0
CD D:GLU228 3.0 0.4 1.0
OE1 D:GLU228 3.0 0.4 1.0
HE1 C:TRP224 3.6 0.8 1.0
HE1 A:TRP224 3.6 0.1 1.0
HE1 B:TRP224 3.7 0.3 1.0
HE1 D:TRP224 3.7 0.7 1.0
CG C:GLU228 4.3 0.1 1.0
CG A:GLU228 4.3 0.6 1.0
CG D:GLU228 4.3 0.4 1.0
CG B:GLU228 4.3 0.1 1.0
HG3 D:GLU228 4.4 0.4 1.0
HG3 C:GLU228 4.4 0.1 1.0
HG3 A:GLU228 4.4 0.6 1.0
NE1 C:TRP224 4.4 0.8 1.0
NE1 A:TRP224 4.4 0.1 1.0
HG3 B:GLU228 4.5 0.1 1.0
NE1 B:TRP224 4.5 0.3 1.0
NE1 D:TRP224 4.5 0.7 1.0
HG2 C:GLU228 4.7 0.1 1.0
HG2 A:GLU228 4.7 0.6 1.0
HG2 B:GLU228 4.7 0.1 1.0
HG2 D:GLU228 4.7 0.4 1.0

Calcium binding site 3 out of 3 in 6dnf

Go back to Calcium Binding Sites List in 6dnf
Calcium binding site 3 out of 3 in the Cryo-Em Structure of the Mitochondrial Calcium Uniporter Mcu From the Fungus Cyphellophora Europaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of the Mitochondrial Calcium Uniporter Mcu From the Fungus Cyphellophora Europaea within 5.0Å range:

Reference:

R.Baradaran, C.Wang, A.F.Siliciano, S.B.Long. Cryo-Em Structures of Fungal and Metazoan Mitochondrial Calcium Uniporters. Nature V. 559 580 2018.
ISSN: ESSN 1476-4687
PubMed: 29995857
DOI: 10.1038/S41586-018-0331-8
Page generated: Wed Jul 9 13:27:44 2025

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