Calcium in PDB 6dwy: Hermes Transposase Deletion Dimer Complex with (C/G) Dna and CA2+

The structure of Hermes Transposase Deletion Dimer Complex with (C/G) Dna and CA2+, PDB code: 6dwy was solved by F.Dyda, A.B.Hickman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.55 / 3.20
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	121.380, 135.350, 103.210, 90.00, 90.00, 90.00
R / Rfree (%)	25.9 / 29.5

The binding sites of Calcium atom in the Hermes Transposase Deletion Dimer Complex with (C/G) Dna and CA2+ (pdb code 6dwy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Hermes Transposase Deletion Dimer Complex with (C/G) Dna and CA2+, PDB code: 6dwy:

Calcium binding site 1 out of 1 in the Hermes Transposase Deletion Dimer Complex with (C/G) Dna and CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Hermes Transposase Deletion Dimer Complex with (C/G) Dna and CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca701 b:68.9 occ:1.00 O3' D:DC7 2.9 84.9 1.0 OP2 C:DG18 3.0 89.2 1.0 OD1 A:ASP180 3.1 85.4 1.0 OD2 A:ASP248 3.2 69.1 1.0 OD2 A:ASP180 3.2 83.8 1.0 CG A:ASP180 3.4 82.9 1.0 OD1 A:ASP248 3.6 71.4 1.0 CG A:ASP248 3.8 75.7 1.0 C3' D:DC7 4.1 75.3 1.0 N A:LEU181 4.2 71.4 1.0 P C:DG18 4.3 90.2 1.0 O A:LEU181 4.3 80.8 1.0 C4' D:DC7 4.4 62.1 1.0 O5' C:DG18 4.5 84.7 1.0 CB A:ASP180 4.7 77.1 1.0 CB A:LEU181 4.7 80.2 1.0 C5' D:DC7 4.8 57.5 1.0 N2 C:DG18 4.9 0.8 1.0 CA A:LEU181 4.9 75.9 1.0 C2' D:DC7 5.0 69.8 1.0 CA A:ASP180 5.0 75.2 1.0

A.B.Hickman, A.R.Voth, H.Ewis, X.Li, N.L.Craig, F.Dyda. Structural Insights Into the Mechanism of Double Strand Break Formation By Hermes, A Hat Family Eukaryotic Dna Transposase. Nucleic Acids Res. V. 46 10286 2018.
ISSN: ESSN 1362-4962
PubMed: 30239795
DOI: 10.1093/NAR/GKY838