Calcium in PDB 6e1h: Structure of 2:1 Human PTCH1-Shh-N Complex

Other elements in 6e1h:

The structure of Structure of 2:1 Human PTCH1-Shh-N Complex also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of 2:1 Human PTCH1-Shh-N Complex (pdb code 6e1h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of 2:1 Human PTCH1-Shh-N Complex, PDB code: 6e1h:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6e1h

Go back to Calcium Binding Sites List in 6e1h
Calcium binding site 1 out of 2 in the Structure of 2:1 Human PTCH1-Shh-N Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of 2:1 Human PTCH1-Shh-N Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca202

b:76.4
occ:1.00
O C:THR125 2.0 71.4 1.0
CA C:CA203 2.3 81.3 1.0
OD2 C:ASP95 2.8 80.9 1.0
C C:THR125 3.1 71.4 1.0
OD1 C:ASP95 3.2 80.9 1.0
CG C:GLU89 3.3 83.8 1.0
CG C:ASP95 3.3 80.9 1.0
CG C:GLU126 3.4 81.0 1.0
OE2 C:GLU89 3.4 83.8 1.0
CD C:GLU89 3.4 83.8 1.0
CA C:GLU126 3.8 81.0 1.0
OE1 C:GLU90 3.8 84.4 1.0
N C:GLU126 3.9 81.0 1.0
N C:GLU89 4.1 83.8 1.0
CB C:GLU126 4.1 81.0 1.0
CB C:GLU89 4.2 83.8 1.0
CA C:THR125 4.2 71.4 1.0
OE1 C:GLU89 4.3 83.8 1.0
N C:ASP88 4.4 79.7 1.0
OE2 C:GLU90 4.5 84.4 1.0
CD C:GLU126 4.5 81.0 1.0
CB C:LYS87 4.6 75.0 1.0
CD C:GLU90 4.6 84.4 1.0
OE2 C:GLU126 4.6 81.0 1.0
CD C:LYS87 4.7 75.0 1.0
CB C:ASP95 4.7 80.9 1.0
OD1 C:ASP129 4.7 89.0 1.0
CA C:GLU89 4.7 83.8 1.0
CB C:THR125 4.8 71.4 1.0
CG C:LYS87 4.9 75.0 1.0
CA C:ASP88 4.9 79.7 1.0

Calcium binding site 2 out of 2 in 6e1h

Go back to Calcium Binding Sites List in 6e1h
Calcium binding site 2 out of 2 in the Structure of 2:1 Human PTCH1-Shh-N Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of 2:1 Human PTCH1-Shh-N Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca203

b:81.3
occ:1.00
CA C:CA202 2.3 76.4 1.0
OD1 C:ASP95 2.4 80.9 1.0
OD1 C:ASP129 2.6 89.0 1.0
OE1 C:GLU90 2.6 84.4 1.0
OE2 C:GLU90 2.8 84.4 1.0
CD C:GLU90 3.1 84.4 1.0
CG C:ASP95 3.2 80.9 1.0
OD2 C:ASP95 3.4 80.9 1.0
CG C:ASP129 3.5 89.0 1.0
OE2 C:GLU89 3.6 83.8 1.0
CG C:GLU126 3.6 81.0 1.0
OD2 C:ASP129 3.6 89.0 1.0
O C:THR125 3.6 71.4 1.0
CG C:GLU89 3.9 83.8 1.0
CA C:GLU126 4.0 81.0 1.0
CB C:GLU126 4.1 81.0 1.0
CD C:GLU89 4.2 83.8 1.0
CD C:GLU126 4.5 81.0 1.0
CG C:GLU90 4.6 84.4 1.0
C C:THR125 4.6 71.4 1.0
CB C:ASP95 4.7 80.9 1.0
OE2 C:GLU126 4.7 81.0 1.0
N C:GLU126 4.8 81.0 1.0
CB C:ASP129 4.9 89.0 1.0
C C:GLU126 5.0 81.0 1.0
N C:GLY127 5.0 82.0 1.0

Reference:

X.Qi, P.Schmiege, E.Coutavas, X.Li. Two Patched Molecules Engage Distinct Sites on Hedgehog Yielding A Signaling-Competent Complex. Science V. 362 2018.
ISSN: ESSN 1095-9203
PubMed: 30139912
DOI: 10.1126/SCIENCE.AAS8843
Page generated: Sat Dec 12 06:04:03 2020

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