Calcium in PDB 6e1m: Structure of ATTPC1(Dde) Reconstituted in Saposin A

The binding sites of Calcium atom in the Structure of ATTPC1(Dde) Reconstituted in Saposin A (pdb code 6e1m). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Structure of ATTPC1(Dde) Reconstituted in Saposin A, PDB code: 6e1m:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in the Structure of ATTPC1(Dde) Reconstituted in Saposin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of ATTPC1(Dde) Reconstituted in Saposin A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:66.0 occ:1.00 OD1 A:ASN631 3.4 61.4 1.0 OD1 B:ASN631 3.4 61.3 1.0 N A:ASN631 4.1 61.4 1.0 N B:ASN631 4.1 61.3 1.0 O A:SER265 4.3 56.3 1.0 O B:SER265 4.3 56.7 1.0 CG A:ASN631 4.3 61.4 1.0 CG B:ASN631 4.3 61.3 1.0 CA B:SER265 4.5 56.7 1.0 CA A:SER265 4.5 56.3 1.0 CB B:SER265 4.5 56.7 1.0 CB A:SER265 4.5 56.3 1.0 CA A:ASN631 4.6 61.4 1.0 CA B:ASN631 4.6 61.3 1.0 O B:MET629 4.6 62.1 1.0 O A:MET629 4.7 61.3 1.0 C A:SER265 4.7 56.3 1.0 C B:SER265 4.7 56.7 1.0

Calcium binding site 2 out of 7 in the Structure of ATTPC1(Dde) Reconstituted in Saposin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of ATTPC1(Dde) Reconstituted in Saposin A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca802 b:0.2 occ:1.00 OG1 B:THR264 4.0 56.4 1.0 OG1 A:THR264 4.0 56.6 1.0 O A:MET629 4.9 61.3 1.0 O B:MET629 4.9 62.1 1.0 O B:THR263 4.9 56.8 1.0 O A:THR263 5.0 56.7 1.0

Calcium binding site 3 out of 7 in the Structure of ATTPC1(Dde) Reconstituted in Saposin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of ATTPC1(Dde) Reconstituted in Saposin A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca803 b:79.1 occ:1.00 OD1 A:ASP606 3.5 67.4 1.0 OD1 B:ASP606 3.6 65.9 1.0 O B:HOH901 4.4 61.3 1.0 O A:HOH901 4.4 61.4 1.0 CG A:ASP606 4.5 67.4 1.0 CG B:ASP606 4.5 65.9 1.0 OD2 A:ASP606 4.8 67.4 1.0 OD2 B:ASP606 4.8 65.9 1.0

Calcium binding site 4 out of 7 in the Structure of ATTPC1(Dde) Reconstituted in Saposin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of ATTPC1(Dde) Reconstituted in Saposin A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca804 b:0.4 occ:1.00 OE2 A:GLU374 2.3 0.0 1.0 CD A:GLU374 3.1 0.0 1.0 OE1 A:GLU374 3.4 0.0 1.0 OD1 A:ASP376 4.0 0.1 1.0 O A:ARG379 4.0 0.7 1.0 O A:ASP380 4.1 0.3 1.0 CG A:ASP376 4.2 0.1 1.0 CG A:GLU374 4.3 0.0 1.0 OD2 A:ASP376 4.6 0.1 1.0 C A:ASP380 4.7 0.3 1.0 C A:ARG379 4.7 0.7 1.0 CD2 A:PHE368 4.7 0.3 1.0 CB A:ASP376 4.7 0.1 1.0 CA A:ASP380 4.9 0.3 1.0 CA A:ASP376 4.9 0.1 1.0

Calcium binding site 5 out of 7 in the Structure of ATTPC1(Dde) Reconstituted in Saposin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of ATTPC1(Dde) Reconstituted in Saposin A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca805 b:0.7 occ:1.00 OD1 A:ASP335 2.5 0.3 1.0 O A:GLU341 2.6 0.9 1.0 ND2 A:ASN339 2.6 0.9 1.0 OD1 A:ASN339 2.7 0.9 1.0 CG A:GLU341 2.9 0.9 1.0 CG A:ASN339 3.0 0.9 1.0 C A:GLU341 3.3 0.9 1.0 CG A:ASP335 3.5 0.3 1.0 OD1 A:ASP337 3.7 0.7 1.0 OE2 A:GLU341 3.8 0.9 1.0 OD2 A:ASP335 3.9 0.3 1.0 CD A:GLU341 3.9 0.9 1.0 CB A:GLU341 4.0 0.9 1.0 CA A:GLU341 4.0 0.9 1.0 N A:ILE342 4.1 0.8 1.0 N A:GLU341 4.1 0.9 1.0 OD2 A:ASP337 4.2 0.7 1.0 CA A:ILE342 4.3 0.8 1.0 CG A:ASP337 4.4 0.7 1.0 CB A:ASN339 4.5 0.9 1.0 OE1 A:GLN346 4.7 0.3 1.0 CB A:ASP335 4.7 0.3 1.0

Calcium binding site 6 out of 7 in the Structure of ATTPC1(Dde) Reconstituted in Saposin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of ATTPC1(Dde) Reconstituted in Saposin A within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca801 b:0.3 occ:1.00 OE2 B:GLU374 2.3 0.6 1.0 CD B:GLU374 2.9 0.6 1.0 OE1 B:GLU374 3.0 0.6 1.0 O B:ARG379 4.0 0.1 1.0 OD1 B:ASP376 4.1 0.2 1.0 CG B:GLU374 4.2 0.6 1.0 CD2 B:PHE368 4.3 0.2 1.0 CG B:ASP376 4.4 0.2 1.0 OD2 B:ASP376 4.8 0.2 1.0 CB B:PHE368 4.8 0.2 1.0 CG B:PHE368 4.9 0.2 1.0 C B:ARG379 5.0 0.1 1.0

Calcium binding site 7 out of 7 in the Structure of ATTPC1(Dde) Reconstituted in Saposin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of ATTPC1(Dde) Reconstituted in Saposin A within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca802 b:0.2 occ:1.00 OD2 B:ASP337 2.3 0.6 1.0 O B:GLU341 2.5 0.3 1.0 ND2 B:ASN339 2.7 0.3 1.0 OD1 B:ASN339 2.8 0.3 1.0 CG B:ASP337 3.0 0.6 1.0 OD1 B:ASP337 3.0 0.6 1.0 CG B:ASN339 3.1 0.3 1.0 OD1 B:ASP335 3.4 0.3 1.0 C B:GLU341 3.6 0.3 1.0 CG B:GLU341 3.8 0.3 1.0 CG B:ASP335 4.0 0.3 1.0 OD2 B:ASP335 4.3 0.3 1.0 CA B:ILE342 4.3 0.2 1.0 N B:ILE342 4.4 0.2 1.0 CB B:ASP337 4.5 0.6 1.0 CA B:GLU341 4.5 0.3 1.0 N B:GLU341 4.5 0.3 1.0 CB B:ASN339 4.6 0.3 1.0 CB B:GLU341 4.7 0.3 1.0 OE2 B:GLU341 4.8 0.3 1.0 CD B:GLU341 4.9 0.3 1.0 C B:ILE342 4.9 0.2 1.0 CB B:ASP335 4.9 0.3 1.0 N B:ASN339 5.0 0.3 1.0

A.F.Kintzer, E.M.Green, P.K.Dominik, M.Bridges, J.P.Armache, D.Deneka, S.S.Kim, W.Hubbell, A.A.Kossiakoff, Y.Cheng, R.M.Stroud. Structural Basis For Activation of Voltage Sensor Domains in An Ion Channel TPC1. Proc. Natl. Acad. Sci. V. 115 E9095 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30190435
DOI: 10.1073/PNAS.1805651115