Calcium in PDB 6e3f: The Structure of the C-Terminal Domains (C123) of Streptococcus Intermedius Antigen I/II (Pas)

The structure of The Structure of the C-Terminal Domains (C123) of Streptococcus Intermedius Antigen I/II (Pas), PDB code: 6e3f was solved by N.Schormann, C.Deivanayagam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.61 / 2.70
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	99.589, 99.589, 514.887, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 24.4

The binding sites of Calcium atom in the The Structure of the C-Terminal Domains (C123) of Streptococcus Intermedius Antigen I/II (Pas) (pdb code 6e3f). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Structure of the C-Terminal Domains (C123) of Streptococcus Intermedius Antigen I/II (Pas), PDB code: 6e3f:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the The Structure of the C-Terminal Domains (C123) of Streptococcus Intermedius Antigen I/II (Pas)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of the C-Terminal Domains (C123) of Streptococcus Intermedius Antigen I/II (Pas) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1301 b:84.3 occ:1.00 OD2 A:ASP944 2.4 68.9 1.0 O A:TYR911 2.5 67.5 1.0 OD1 A:ASN910 2.5 73.6 0.5 OD1 A:ASP946 2.7 0.8 1.0 OE1 A:GLN947 2.7 72.2 1.0 OD1 A:ASP944 2.8 67.6 1.0 CG A:ASP944 2.9 68.3 1.0 CG A:ASN910 3.2 74.8 0.5 ND2 A:ASN910 3.5 75.6 0.5 C A:TYR911 3.7 67.7 1.0 CG A:ASP946 3.7 94.2 1.0 CD A:GLN947 3.9 70.8 1.0 OD2 A:ASP946 4.0 97.8 1.0 ND2 A:ASN910 4.1 70.2 0.5 CB A:ASN910 4.2 72.9 0.5 CB A:ASP944 4.4 67.6 1.0 CB A:GLN947 4.5 70.1 1.0 N A:TYR911 4.5 72.7 1.0 C A:ASN910 4.5 73.6 0.5 C A:ASN910 4.5 72.8 0.5 N A:ILE912 4.5 67.7 1.0 N A:LYS913 4.5 72.1 1.0 CB A:ASN910 4.5 75.5 0.5 N A:GLN947 4.6 74.6 1.0 CA A:ILE912 4.6 71.4 1.0 O A:ASN910 4.7 73.4 0.5 CG A:GLN947 4.7 69.9 1.0 CG A:ASN910 4.7 71.8 0.5 CA A:TYR911 4.7 69.8 1.0 O A:ASN910 4.8 72.7 0.5 CA A:ASN910 4.9 74.0 0.5 NE2 A:GLN947 4.9 69.3 1.0

Calcium binding site 2 out of 2 in the The Structure of the C-Terminal Domains (C123) of Streptococcus Intermedius Antigen I/II (Pas)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Structure of the C-Terminal Domains (C123) of Streptococcus Intermedius Antigen I/II (Pas) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1302 b:0.9 occ:1.00 O A:TYR968 2.2 72.0 1.0 O A:LYS1020 2.4 79.4 1.0 O A:ALA1022 2.6 75.2 1.0 OD1 A:ASP967 2.7 72.2 1.0 OE1 A:GLU970 3.1 91.2 1.0 C A:TYR968 3.4 71.9 1.0 C A:LYS1020 3.7 83.8 1.0 C A:ALA1022 3.7 76.2 1.0 N A:ALA1022 3.7 80.9 1.0 CG A:ASP967 3.8 70.0 1.0 C A:ASP967 4.0 67.7 1.0 N A:TYR968 4.0 70.5 1.0 C A:GLY1021 4.1 84.5 1.0 CD A:GLU970 4.1 89.4 1.0 N A:PRO969 4.2 73.7 1.0 CA A:PRO969 4.2 75.3 1.0 O A:ASP967 4.2 67.1 1.0 CA A:ALA1022 4.3 78.8 1.0 CA A:TYR968 4.4 71.4 1.0 N A:GLU970 4.4 81.2 1.0 CA A:ASP967 4.4 68.7 1.0 CB A:LYS1020 4.5 95.9 1.0 CA A:LYS1020 4.6 87.7 1.0 OD2 A:ASP967 4.6 70.5 1.0 N A:GLY1021 4.6 84.4 1.0 OE2 A:GLU970 4.6 90.2 1.0 O A:GLY1021 4.6 78.7 1.0 CA A:GLY1021 4.6 85.1 1.0 CB A:ASP967 4.7 69.4 1.0 N A:LYS1020 4.7 83.6 1.0 N A:PHE1023 4.8 73.0 1.0 C A:PRO969 4.9 76.9 1.0 CB A:ALA1022 5.0 75.9 1.0

N.Schormann, C.Deivanayagam. The Structure of the C-Terminal Domains (C123) of Streptococcus Intermedius Antigen I/II (Pas) To Be Published.