Calcium in PDB 6eac: Pseudomonas Syringae Selo
Protein crystallography data
The structure of Pseudomonas Syringae Selo, PDB code: 6eac
was solved by
D.R.Tomchick,
V.S.Tagliabracci,
A.Sreelatha,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.14 /
2.27
|
Space group
|
I 2 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
136.174,
158.056,
227.248,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.2 /
21.2
|
Other elements in 6eac:
The structure of Pseudomonas Syringae Selo also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Pseudomonas Syringae Selo
(pdb code 6eac). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Pseudomonas Syringae Selo, PDB code: 6eac:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 1 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:25.1
occ:1.00
|
O2B
|
A:ANP506
|
2.3
|
26.9
|
1.0
|
O2A
|
A:ANP506
|
2.3
|
31.5
|
1.0
|
OD1
|
A:ASP262
|
2.3
|
27.5
|
1.0
|
O
|
A:HOH774
|
2.4
|
28.9
|
1.0
|
O
|
A:HOH737
|
2.5
|
25.2
|
1.0
|
O
|
A:HOH744
|
2.5
|
22.8
|
1.0
|
OD2
|
A:ASP262
|
2.6
|
21.8
|
1.0
|
CG
|
A:ASP262
|
2.8
|
23.1
|
1.0
|
HZ1
|
A:LYS113
|
3.2
|
38.5
|
1.0
|
HH21
|
A:ARG93
|
3.3
|
35.3
|
1.0
|
PA
|
A:ANP506
|
3.3
|
33.7
|
1.0
|
PB
|
A:ANP506
|
3.4
|
29.1
|
1.0
|
O3A
|
A:ANP506
|
3.5
|
31.6
|
1.0
|
NH2
|
A:ARG93
|
4.0
|
29.4
|
1.0
|
HH22
|
A:ARG93
|
4.0
|
35.3
|
1.0
|
HA3
|
A:GLY264
|
4.0
|
28.3
|
1.0
|
O1A
|
A:ANP506
|
4.1
|
25.6
|
1.0
|
NZ
|
A:LYS113
|
4.1
|
32.1
|
1.0
|
O1B
|
A:ANP506
|
4.2
|
30.9
|
1.0
|
MG
|
A:MG501
|
4.3
|
10.8
|
1.0
|
CB
|
A:ASP262
|
4.3
|
23.8
|
1.0
|
HZ2
|
A:LYS113
|
4.4
|
38.5
|
1.0
|
HZ3
|
A:LYS113
|
4.5
|
38.5
|
1.0
|
O2G
|
A:ANP506
|
4.5
|
29.7
|
1.0
|
O
|
A:HOH787
|
4.6
|
36.2
|
1.0
|
O5'
|
A:ANP506
|
4.6
|
33.6
|
1.0
|
HA2
|
A:GLY264
|
4.6
|
28.3
|
1.0
|
CA
|
A:GLY264
|
4.7
|
23.5
|
1.0
|
HD21
|
A:ASN253
|
4.7
|
37.1
|
1.0
|
HB3
|
A:ASP262
|
4.7
|
28.5
|
1.0
|
N3B
|
A:ANP506
|
4.7
|
29.4
|
1.0
|
HB2
|
A:ASP262
|
4.8
|
28.5
|
1.0
|
O
|
A:HOH753
|
4.8
|
32.7
|
1.0
|
O
|
A:PHE263
|
4.8
|
27.5
|
1.0
|
HE3
|
A:LYS113
|
4.8
|
36.1
|
1.0
|
N
|
A:GLY264
|
4.8
|
24.9
|
1.0
|
HA
|
A:ASP262
|
4.9
|
30.7
|
1.0
|
C
|
A:PHE263
|
4.9
|
28.1
|
1.0
|
O1G
|
A:ANP506
|
5.0
|
17.9
|
1.0
|
CE
|
A:LYS113
|
5.0
|
30.1
|
1.0
|
PG
|
A:ANP506
|
5.0
|
25.9
|
1.0
|
C
|
A:ASP262
|
5.0
|
25.5
|
1.0
|
|
Calcium binding site 2 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 2 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:55.9
occ:1.00
|
O
|
A:SER362
|
2.4
|
38.7
|
1.0
|
O
|
A:ASP388
|
2.5
|
32.6
|
1.0
|
O
|
A:GLY363
|
2.6
|
31.2
|
1.0
|
HA
|
A:ASP388
|
3.3
|
61.4
|
1.0
|
HB3
|
A:ASP388
|
3.3
|
75.4
|
1.0
|
C
|
A:GLY363
|
3.4
|
34.2
|
1.0
|
C
|
A:ASP388
|
3.5
|
39.2
|
1.0
|
HA3
|
A:GLY363
|
3.6
|
40.9
|
1.0
|
C
|
A:SER362
|
3.6
|
39.4
|
1.0
|
CA
|
A:ASP388
|
3.7
|
51.2
|
1.0
|
HG22
|
A:VAL364
|
3.8
|
45.8
|
1.0
|
CA
|
A:GLY363
|
3.9
|
34.1
|
1.0
|
HH22
|
A:ARG473
|
3.9
|
52.0
|
1.0
|
CB
|
A:ASP388
|
4.0
|
62.8
|
1.0
|
HH12
|
A:ARG473
|
4.1
|
56.0
|
1.0
|
HA
|
A:VAL364
|
4.1
|
40.2
|
1.0
|
N
|
A:GLY363
|
4.2
|
39.4
|
1.0
|
HB3
|
A:SER362
|
4.2
|
73.7
|
1.0
|
N
|
A:VAL364
|
4.3
|
34.3
|
1.0
|
HG23
|
A:VAL364
|
4.5
|
45.8
|
1.0
|
CG2
|
A:VAL364
|
4.5
|
38.1
|
1.0
|
HB2
|
A:ASP388
|
4.6
|
75.4
|
1.0
|
N
|
A:PHE389
|
4.7
|
40.3
|
1.0
|
CA
|
A:VAL364
|
4.7
|
33.5
|
1.0
|
HA
|
A:PHE389
|
4.7
|
48.4
|
1.0
|
CA
|
A:SER362
|
4.7
|
52.3
|
1.0
|
NH2
|
A:ARG473
|
4.8
|
43.3
|
1.0
|
HA2
|
A:GLY363
|
4.8
|
40.9
|
1.0
|
HA
|
A:SER362
|
4.9
|
62.8
|
1.0
|
CB
|
A:SER362
|
4.9
|
61.4
|
1.0
|
CG
|
A:ASP388
|
4.9
|
69.9
|
1.0
|
NH1
|
A:ARG473
|
4.9
|
46.6
|
1.0
|
OD1
|
A:ASP388
|
4.9
|
72.9
|
1.0
|
H
|
A:VAL364
|
5.0
|
41.2
|
1.0
|
|
Calcium binding site 3 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 3 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:82.9
occ:1.00
|
O
|
A:HOH759
|
2.4
|
52.9
|
1.0
|
O
|
A:GLN357
|
2.5
|
32.0
|
1.0
|
O
|
A:HOH771
|
2.5
|
63.6
|
1.0
|
H
|
A:ASN361
|
2.8
|
71.5
|
1.0
|
HA
|
A:LEU358
|
3.1
|
36.3
|
1.0
|
O
|
A:LEU358
|
3.2
|
28.6
|
1.0
|
HG
|
A:SER362
|
3.4
|
77.9
|
1.0
|
HB3
|
A:GLN360
|
3.4
|
47.9
|
1.0
|
HB2
|
A:ASN361
|
3.5
|
81.4
|
1.0
|
C
|
A:LEU358
|
3.6
|
29.7
|
1.0
|
C
|
A:GLN357
|
3.6
|
28.4
|
1.0
|
HD22
|
A:ASN361
|
3.6
|
84.2
|
1.0
|
N
|
A:ASN361
|
3.7
|
59.6
|
1.0
|
CA
|
A:LEU358
|
3.7
|
30.2
|
1.0
|
H
|
A:GLN360
|
3.8
|
43.3
|
1.0
|
OD2
|
A:ASP391
|
4.0
|
61.5
|
1.0
|
N
|
A:GLN360
|
4.1
|
36.1
|
1.0
|
OG
|
A:SER362
|
4.1
|
64.9
|
1.0
|
N
|
A:LEU358
|
4.1
|
29.3
|
1.0
|
CB
|
A:GLN360
|
4.3
|
39.9
|
1.0
|
CB
|
A:ASN361
|
4.3
|
67.8
|
1.0
|
ND2
|
A:ASN361
|
4.4
|
70.2
|
1.0
|
CA
|
A:ASN361
|
4.4
|
61.6
|
1.0
|
HD23
|
A:LEU358
|
4.4
|
54.0
|
1.0
|
CA
|
A:GLN360
|
4.5
|
47.6
|
1.0
|
N
|
A:MET359
|
4.5
|
28.4
|
1.0
|
C
|
A:MET359
|
4.6
|
32.5
|
1.0
|
C
|
A:GLN360
|
4.6
|
64.3
|
1.0
|
H
|
A:SER362
|
4.6
|
61.4
|
1.0
|
C
|
A:ASN361
|
4.7
|
50.9
|
1.0
|
HB2
|
A:GLN360
|
4.7
|
47.9
|
1.0
|
N
|
A:SER362
|
4.7
|
51.2
|
1.0
|
CG
|
A:ASN361
|
4.8
|
67.0
|
1.0
|
HA
|
A:GLN357
|
4.9
|
34.7
|
1.0
|
CA
|
A:GLN357
|
4.9
|
28.9
|
1.0
|
HB3
|
A:GLN357
|
4.9
|
38.8
|
1.0
|
HD21
|
A:ASN361
|
5.0
|
84.2
|
1.0
|
H
|
A:LEU358
|
5.0
|
35.2
|
1.0
|
|
Calcium binding site 4 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 4 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca507
b:60.4
occ:1.00
|
O
|
A:HOH766
|
2.5
|
37.5
|
1.0
|
OE2
|
A:GLU410
|
2.5
|
30.8
|
1.0
|
O
|
A:HOH757
|
2.5
|
43.1
|
1.0
|
O
|
A:HOH763
|
2.5
|
41.0
|
1.0
|
O
|
A:HOH788
|
2.6
|
33.8
|
1.0
|
OE1
|
A:GLU410
|
2.6
|
26.7
|
1.0
|
CD
|
A:GLU410
|
2.9
|
26.7
|
1.0
|
H
|
A:ASN411
|
3.7
|
40.6
|
1.0
|
HA
|
A:GLU410
|
3.9
|
33.5
|
1.0
|
H
|
A:GLY412
|
3.9
|
43.7
|
1.0
|
CG
|
A:GLU410
|
4.4
|
26.9
|
1.0
|
O
|
A:HOH655
|
4.4
|
32.7
|
1.0
|
O
|
A:GLY412
|
4.5
|
30.6
|
1.0
|
N
|
A:ASN411
|
4.5
|
33.8
|
1.0
|
N
|
A:GLY412
|
4.5
|
36.4
|
1.0
|
CA
|
A:GLU410
|
4.7
|
27.9
|
1.0
|
HG3
|
A:GLU410
|
4.7
|
32.3
|
1.0
|
HA2
|
A:GLY412
|
4.8
|
43.1
|
1.0
|
O
|
A:HOH613
|
4.9
|
32.8
|
1.0
|
HG2
|
A:GLU410
|
4.9
|
32.3
|
1.0
|
O
|
A:HOH778
|
4.9
|
39.6
|
1.0
|
C
|
A:GLY412
|
4.9
|
31.2
|
1.0
|
CB
|
A:GLU410
|
5.0
|
25.1
|
1.0
|
CA
|
A:GLY412
|
5.0
|
35.9
|
1.0
|
|
Calcium binding site 5 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 5 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca502
b:28.8
occ:1.00
|
O1A
|
B:ANP507
|
2.2
|
30.8
|
1.0
|
O1B
|
B:ANP507
|
2.3
|
22.3
|
1.0
|
OD1
|
B:ASP262
|
2.4
|
30.4
|
1.0
|
O
|
B:HOH713
|
2.4
|
27.5
|
1.0
|
O
|
B:HOH731
|
2.4
|
24.1
|
1.0
|
O
|
B:HOH762
|
2.4
|
29.6
|
1.0
|
OD2
|
B:ASP262
|
2.6
|
24.9
|
1.0
|
CG
|
B:ASP262
|
2.8
|
29.8
|
1.0
|
HH21
|
B:ARG93
|
3.2
|
26.9
|
1.0
|
HZ1
|
B:LYS113
|
3.2
|
41.9
|
1.0
|
PA
|
B:ANP507
|
3.3
|
33.4
|
1.0
|
PB
|
B:ANP507
|
3.4
|
29.1
|
1.0
|
O3A
|
B:ANP507
|
3.5
|
29.3
|
1.0
|
NH2
|
B:ARG93
|
3.9
|
22.4
|
1.0
|
HH22
|
B:ARG93
|
3.9
|
26.9
|
1.0
|
O2A
|
B:ANP507
|
4.0
|
24.5
|
1.0
|
HA3
|
B:GLY264
|
4.0
|
29.0
|
1.0
|
NZ
|
B:LYS113
|
4.1
|
34.9
|
1.0
|
O2B
|
B:ANP507
|
4.2
|
33.1
|
1.0
|
MG
|
B:MG501
|
4.3
|
13.1
|
1.0
|
O
|
B:HOH766
|
4.3
|
36.7
|
1.0
|
HZ2
|
B:LYS113
|
4.3
|
41.9
|
1.0
|
CB
|
B:ASP262
|
4.4
|
28.5
|
1.0
|
HZ3
|
B:LYS113
|
4.4
|
41.9
|
1.0
|
O1G
|
B:ANP507
|
4.6
|
28.1
|
1.0
|
HA2
|
B:GLY264
|
4.6
|
29.0
|
1.0
|
O5'
|
B:ANP507
|
4.6
|
35.0
|
1.0
|
CA
|
B:GLY264
|
4.6
|
24.1
|
1.0
|
N3B
|
B:ANP507
|
4.7
|
30.5
|
1.0
|
HB3
|
B:ASP262
|
4.8
|
34.2
|
1.0
|
HD21
|
B:ASN253
|
4.8
|
33.4
|
1.0
|
O
|
B:PHE263
|
4.8
|
28.2
|
1.0
|
HB2
|
B:ASP262
|
4.8
|
34.2
|
1.0
|
O2G
|
B:ANP507
|
4.8
|
16.5
|
1.0
|
N
|
B:GLY264
|
4.8
|
27.8
|
1.0
|
HE3
|
B:LYS113
|
4.8
|
38.6
|
1.0
|
HA
|
B:ASP262
|
4.9
|
33.7
|
1.0
|
PG
|
B:ANP507
|
5.0
|
26.8
|
1.0
|
C
|
B:PHE263
|
5.0
|
28.4
|
1.0
|
CE
|
B:LYS113
|
5.0
|
32.2
|
1.0
|
HE
|
B:ARG93
|
5.0
|
35.4
|
1.0
|
|
Calcium binding site 6 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 6 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca503
b:58.8
occ:1.00
|
O
|
B:SER362
|
2.4
|
38.2
|
1.0
|
O
|
B:HOH692
|
2.4
|
41.6
|
1.0
|
O
|
B:HOH740
|
2.5
|
49.3
|
1.0
|
O
|
B:ASP388
|
2.5
|
38.4
|
1.0
|
O
|
B:HOH763
|
2.6
|
44.3
|
1.0
|
O
|
B:GLY363
|
2.6
|
42.6
|
1.0
|
C
|
B:GLY363
|
3.4
|
42.9
|
1.0
|
HA
|
B:ASP388
|
3.5
|
65.0
|
1.0
|
HB3
|
B:ASP388
|
3.5
|
81.9
|
1.0
|
HA3
|
B:GLY363
|
3.5
|
51.5
|
1.0
|
C
|
B:ASP388
|
3.5
|
44.5
|
1.0
|
C
|
B:SER362
|
3.6
|
44.0
|
1.0
|
HG22
|
B:VAL364
|
3.8
|
52.1
|
1.0
|
HH22
|
B:ARG473
|
3.8
|
54.7
|
1.0
|
CA
|
B:GLY363
|
3.8
|
42.9
|
1.0
|
CA
|
B:ASP388
|
3.9
|
54.2
|
1.0
|
HH12
|
B:ARG473
|
4.1
|
61.9
|
1.0
|
HG23
|
B:VAL364
|
4.1
|
52.1
|
1.0
|
CB
|
B:ASP388
|
4.1
|
68.2
|
1.0
|
N
|
B:GLY363
|
4.2
|
44.0
|
1.0
|
HA
|
B:VAL364
|
4.2
|
49.2
|
1.0
|
HB3
|
B:SER362
|
4.3
|
75.5
|
1.0
|
N
|
B:VAL364
|
4.3
|
40.4
|
1.0
|
CG2
|
B:VAL364
|
4.4
|
43.4
|
1.0
|
HA
|
B:PHE389
|
4.6
|
53.8
|
1.0
|
NH2
|
B:ARG473
|
4.7
|
45.6
|
1.0
|
N
|
B:PHE389
|
4.7
|
43.8
|
1.0
|
CA
|
B:SER362
|
4.7
|
53.2
|
1.0
|
HA2
|
B:GLY363
|
4.8
|
51.5
|
1.0
|
CA
|
B:VAL364
|
4.8
|
41.0
|
1.0
|
HA
|
B:SER362
|
4.8
|
63.9
|
1.0
|
OD1
|
B:ASP388
|
4.9
|
88.5
|
1.0
|
NH1
|
B:ARG473
|
4.9
|
51.6
|
1.0
|
HB2
|
B:ASP388
|
4.9
|
81.9
|
1.0
|
CG
|
B:ASP388
|
4.9
|
82.2
|
1.0
|
H
|
B:VAL364
|
5.0
|
48.5
|
1.0
|
|
Calcium binding site 7 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 7 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca504
b:67.2
occ:1.00
|
O
|
B:HOH761
|
2.4
|
38.9
|
1.0
|
O
|
B:HOH682
|
2.5
|
36.2
|
1.0
|
OE2
|
B:GLU410
|
2.5
|
36.5
|
1.0
|
OE1
|
B:GLU410
|
3.1
|
35.6
|
1.0
|
CD
|
B:GLU410
|
3.2
|
32.4
|
1.0
|
H
|
B:GLY412
|
3.4
|
41.2
|
1.0
|
H
|
B:ASN411
|
3.6
|
37.8
|
1.0
|
N
|
B:GLY412
|
4.0
|
34.3
|
1.0
|
O
|
B:GLY412
|
4.1
|
33.8
|
1.0
|
HA
|
B:GLU410
|
4.2
|
37.0
|
1.0
|
HA2
|
B:GLY412
|
4.2
|
42.4
|
1.0
|
N
|
B:ASN411
|
4.4
|
31.5
|
1.0
|
C
|
B:GLY412
|
4.4
|
34.6
|
1.0
|
CA
|
B:GLY412
|
4.4
|
35.3
|
1.0
|
CG
|
B:GLU410
|
4.6
|
31.5
|
1.0
|
HG3
|
B:GLU410
|
4.9
|
37.9
|
1.0
|
C
|
B:ASN411
|
4.9
|
32.0
|
1.0
|
CA
|
B:GLU410
|
5.0
|
30.9
|
1.0
|
|
Calcium binding site 8 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 8 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca505
b:71.5
occ:1.00
|
O
|
B:ALA70
|
2.4
|
41.4
|
1.0
|
O
|
B:ALA68
|
2.5
|
32.4
|
1.0
|
O
|
B:HOH764
|
2.5
|
44.0
|
1.0
|
C
|
B:ALA70
|
3.6
|
33.4
|
1.0
|
C
|
B:ALA68
|
3.6
|
30.8
|
1.0
|
HA
|
B:GLU71
|
3.7
|
47.9
|
1.0
|
HA
|
B:ALA68
|
3.8
|
40.2
|
1.0
|
O
|
B:HOH769
|
4.1
|
35.6
|
1.0
|
HB2
|
B:GLU71
|
4.1
|
50.2
|
1.0
|
N
|
B:ALA70
|
4.3
|
33.2
|
1.0
|
CA
|
B:ALA68
|
4.3
|
33.5
|
1.0
|
H
|
B:ALA70
|
4.3
|
39.9
|
1.0
|
CA
|
B:GLU71
|
4.4
|
39.9
|
1.0
|
N
|
B:GLU71
|
4.4
|
35.8
|
1.0
|
O
|
B:TRP67
|
4.5
|
33.7
|
1.0
|
C
|
B:GLU69
|
4.5
|
34.3
|
1.0
|
CA
|
B:ALA70
|
4.5
|
35.0
|
1.0
|
N
|
B:GLU69
|
4.6
|
31.3
|
1.0
|
HA
|
B:GLU69
|
4.6
|
42.3
|
1.0
|
HD2
|
B:PRO72
|
4.6
|
47.7
|
1.0
|
HG3
|
B:GLU71
|
4.7
|
49.2
|
1.0
|
CB
|
B:GLU71
|
4.7
|
41.8
|
1.0
|
HB1
|
B:ALA68
|
4.8
|
37.4
|
1.0
|
CA
|
B:GLU69
|
4.8
|
35.2
|
1.0
|
HB3
|
B:ALA70
|
4.9
|
40.9
|
1.0
|
HD3
|
B:PRO72
|
5.0
|
47.7
|
1.0
|
|
Calcium binding site 9 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 9 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca502
b:30.9
occ:1.00
|
O
|
C:HOH715
|
2.2
|
29.4
|
1.0
|
O1B
|
C:ANP506
|
2.3
|
24.5
|
1.0
|
OD1
|
C:ASP262
|
2.3
|
26.3
|
1.0
|
O
|
C:HOH703
|
2.3
|
29.7
|
1.0
|
O2A
|
C:ANP506
|
2.4
|
26.2
|
1.0
|
O
|
C:HOH717
|
2.6
|
29.2
|
1.0
|
OD2
|
C:ASP262
|
2.7
|
26.7
|
1.0
|
CG
|
C:ASP262
|
2.9
|
29.1
|
1.0
|
HZ1
|
C:LYS113
|
3.2
|
40.7
|
1.0
|
PA
|
C:ANP506
|
3.4
|
36.5
|
1.0
|
PB
|
C:ANP506
|
3.4
|
29.4
|
1.0
|
O3A
|
C:ANP506
|
3.5
|
31.8
|
1.0
|
HA3
|
C:GLY264
|
4.0
|
35.6
|
1.0
|
O
|
C:HOH684
|
4.0
|
32.2
|
1.0
|
O1A
|
C:ANP506
|
4.1
|
30.9
|
1.0
|
HH12
|
C:ARG93
|
4.1
|
35.8
|
1.0
|
HH11
|
C:ARG93
|
4.1
|
35.8
|
1.0
|
NZ
|
C:LYS113
|
4.1
|
33.9
|
1.0
|
O2B
|
C:ANP506
|
4.2
|
29.1
|
1.0
|
MG
|
C:MG501
|
4.3
|
20.2
|
1.0
|
CB
|
C:ASP262
|
4.4
|
28.1
|
1.0
|
HZ3
|
C:LYS113
|
4.4
|
40.7
|
1.0
|
NH1
|
C:ARG93
|
4.4
|
29.8
|
1.0
|
HZ2
|
C:LYS113
|
4.5
|
40.7
|
1.0
|
O
|
C:HOH720
|
4.5
|
36.8
|
1.0
|
HA2
|
C:GLY264
|
4.6
|
35.6
|
1.0
|
CA
|
C:GLY264
|
4.6
|
29.7
|
1.0
|
O3G
|
C:ANP506
|
4.7
|
26.1
|
1.0
|
O5'
|
C:ANP506
|
4.7
|
37.2
|
1.0
|
N3B
|
C:ANP506
|
4.7
|
33.7
|
1.0
|
O
|
C:PHE263
|
4.7
|
34.5
|
1.0
|
HD21
|
C:ASN253
|
4.7
|
41.3
|
1.0
|
HB3
|
C:ASP262
|
4.8
|
33.7
|
1.0
|
N
|
C:GLY264
|
4.8
|
35.2
|
1.0
|
HB2
|
C:ASP262
|
4.9
|
33.7
|
1.0
|
O2G
|
C:ANP506
|
4.9
|
22.9
|
1.0
|
HA
|
C:ASP262
|
4.9
|
30.5
|
1.0
|
C
|
C:PHE263
|
4.9
|
34.0
|
1.0
|
HE2
|
C:LYS113
|
4.9
|
41.9
|
1.0
|
HE3
|
C:LYS113
|
5.0
|
41.9
|
1.0
|
CE
|
C:LYS113
|
5.0
|
34.9
|
1.0
|
|
Calcium binding site 10 out
of 14 in 6eac
Go back to
Calcium Binding Sites List in 6eac
Calcium binding site 10 out
of 14 in the Pseudomonas Syringae Selo
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Pseudomonas Syringae Selo within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca503
b:66.2
occ:1.00
|
OD1
|
C:ASP388
|
2.2
|
0.1
|
1.0
|
O
|
C:SER362
|
2.3
|
53.4
|
1.0
|
O
|
C:HOH714
|
2.4
|
44.0
|
1.0
|
O
|
C:ASP388
|
2.6
|
44.8
|
1.0
|
O
|
C:GLY363
|
2.6
|
47.5
|
1.0
|
CG
|
C:ASP388
|
3.3
|
99.9
|
1.0
|
C
|
C:GLY363
|
3.4
|
47.0
|
1.0
|
C
|
C:SER362
|
3.5
|
50.4
|
1.0
|
C
|
C:ASP388
|
3.6
|
55.8
|
1.0
|
HA
|
C:ASP388
|
3.7
|
87.3
|
1.0
|
HA3
|
C:GLY363
|
3.7
|
53.8
|
1.0
|
HG22
|
C:VAL364
|
3.8
|
51.8
|
1.0
|
HB3
|
C:SER362
|
4.0
|
70.6
|
1.0
|
CA
|
C:GLY363
|
4.0
|
44.9
|
1.0
|
HH22
|
C:ARG473
|
4.0
|
75.3
|
1.0
|
CA
|
C:ASP388
|
4.0
|
72.7
|
1.0
|
OD2
|
C:ASP388
|
4.1
|
0.6
|
1.0
|
HH12
|
C:ARG473
|
4.1
|
82.3
|
1.0
|
HA
|
C:VAL364
|
4.2
|
46.0
|
1.0
|
N
|
C:GLY363
|
4.2
|
48.2
|
1.0
|
CB
|
C:ASP388
|
4.2
|
89.9
|
1.0
|
HG23
|
C:VAL364
|
4.3
|
51.8
|
1.0
|
N
|
C:VAL364
|
4.4
|
42.7
|
1.0
|
CG2
|
C:VAL364
|
4.5
|
43.2
|
1.0
|
CA
|
C:SER362
|
4.6
|
54.5
|
1.0
|
CB
|
C:SER362
|
4.7
|
58.9
|
1.0
|
HA
|
C:PHE389
|
4.7
|
63.7
|
1.0
|
HB3
|
C:ASP388
|
4.7
|
0.9
|
1.0
|
HA
|
C:SER362
|
4.7
|
65.5
|
1.0
|
CA
|
C:VAL364
|
4.8
|
38.3
|
1.0
|
N
|
C:PHE389
|
4.8
|
53.5
|
1.0
|
NH2
|
C:ARG473
|
4.8
|
62.8
|
1.0
|
HB2
|
C:SER362
|
4.9
|
70.6
|
1.0
|
HA2
|
C:GLY363
|
4.9
|
53.8
|
1.0
|
HG23
|
C:VAL390
|
4.9
|
77.3
|
1.0
|
NH1
|
C:ARG473
|
5.0
|
68.6
|
1.0
|
HB2
|
C:ASP388
|
5.0
|
0.9
|
1.0
|
|
Reference:
A.Sreelatha,
S.S.Yee,
V.A.Lopez,
B.C.Park,
L.N.Kinch,
S.Pilch,
K.A.Servage,
J.Zhang,
J.Jiou,
M.Karasiewicz-Urbanska,
M.Lobocka,
N.V.Grishin,
K.Orth,
R.Kucharczyk,
K.Pawlowski,
D.R.Tomchick,
V.S.Tagliabracci.
Protein Ampylation By An Evolutionarily Conserved Pseudokinase. Cell V. 175 809 2018.
ISSN: ISSN 1097-4172
PubMed: 30270044
DOI: 10.1016/J.CELL.2018.08.046
Page generated: Mon Jul 15 18:11:29 2024
|