Calcium in PDB 6ef7: Gspb Siglec Domain

The structure of Gspb Siglec Domain, PDB code: 6ef7 was solved by T.M.Iverson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.04 / 1.03
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	33.920, 46.210, 72.970, 90.00, 90.00, 90.00
R / Rfree (%)	12.5 / 14.1

The binding sites of Calcium atom in the Gspb Siglec Domain (pdb code 6ef7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Gspb Siglec Domain, PDB code: 6ef7:

Calcium binding site 1 out of 1 in the Gspb Siglec Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Gspb Siglec Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:5.8 occ:1.00 O A:GLU401 2.3 6.1 1.0 OD2 A:ASP490 2.3 6.5 1.0 OD1 A:ASN428 2.4 7.4 1.0 OD2 A:ASP399 2.4 8.4 1.0 OD2 A:ASP427 2.4 5.6 1.0 OD1 A:ASP427 2.4 5.8 1.0 OD1 A:ASP399 2.5 8.1 1.0 CG A:ASP427 2.8 5.5 1.0 CG A:ASP399 2.8 8.4 1.0 HD22 A:ASN494 3.4 9.4 1.0 CG A:ASP490 3.4 6.0 1.0 CG A:ASN428 3.5 7.8 1.0 C A:GLU401 3.5 6.1 1.0 HB3 A:GLU401 3.6 9.5 1.0 HD21 A:ASN428 3.6 11.6 1.0 H A:SER429 3.7 8.7 1.0 H A:GLU401 3.7 10.4 1.0 HB3 A:ASP490 3.8 7.2 1.0 HB2 A:ASP490 3.8 7.2 1.0 H A:ASN428 3.9 7.7 1.0 HG A:SER429 3.9 8.6 1.0 HB3 A:SER429 3.9 9.4 1.0 ND2 A:ASN428 3.9 9.7 1.0 CB A:ASP490 4.0 6.0 1.0 ND2 A:ASN494 4.1 7.8 1.0 HD3 A:PRO403 4.1 5.7 1.0 HB2 A:ASN494 4.2 7.2 1.0 CA A:GLU401 4.2 7.6 1.0 N A:GLU401 4.2 8.7 1.0 CB A:GLU401 4.3 8.0 1.0 CB A:ASP427 4.3 5.7 1.0 CB A:ASP399 4.3 9.8 1.0 HA A:ARG402 4.3 6.3 1.0 HD21 A:ASN494 4.4 9.4 1.0 N A:ASN428 4.4 6.4 1.0 HG2 A:GLU401 4.4 12.5 1.0 O A:HOH737 4.4 7.4 1.0 N A:SER429 4.4 7.2 1.0 OD1 A:ASP490 4.4 6.5 1.0 N A:ARG402 4.5 5.5 1.0 C A:ARG402 4.5 4.8 1.0 OG A:SER429 4.5 7.1 1.0 N A:PRO403 4.6 4.5 1.0 CB A:SER429 4.6 7.9 1.0 HB3 A:ASP399 4.6 11.8 1.0 CA A:ARG402 4.6 5.2 1.0 HB3 A:ASP427 4.7 6.8 1.0 CB A:ASN428 4.7 8.0 1.0 HB2 A:ASP427 4.7 6.8 1.0 HB2 A:ASP399 4.7 11.8 1.0 HA A:ASP427 4.8 6.5 1.0 HD22 A:ASN428 4.8 11.6 1.0 CD A:PRO403 4.8 4.8 1.0 O A:HOH759 4.8 5.9 1.0 HA A:PRO403 4.9 5.5 1.0 O A:ARG402 4.9 5.6 1.0 CG A:GLU401 4.9 10.4 1.0 CG A:ASN494 4.9 7.1 1.0 CB A:ASN494 5.0 6.0 1.0 HB3 A:ALA492 5.0 10.4 1.0 CA A:ASN428 5.0 7.2 1.0 CA A:ASP427 5.0 5.4 1.0

T.M.Iverson, T.M.Iverson. N/A N/A.