Calcium in PDB 6efa: Gspb Siglec + Unique Domains

The structure of Gspb Siglec + Unique Domains, PDB code: 6efa was solved by T.M.Iverson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.03 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	32.980, 47.630, 136.236, 90.00, 90.00, 90.00
R / Rfree (%)	16.3 / 21.2

The binding sites of Calcium atom in the Gspb Siglec + Unique Domains (pdb code 6efa). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Gspb Siglec + Unique Domains, PDB code: 6efa:

Calcium binding site 1 out of 1 in the Gspb Siglec + Unique Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Gspb Siglec + Unique Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca700 b:32.6 occ:1.00 O A:GLU401 2.3 23.0 1.0 OD1 A:ASN428 2.4 34.4 1.0 OD1 A:ASP427 2.5 28.0 1.0 OD2 A:ASP490 2.5 26.4 1.0 OD2 A:ASP399 2.5 31.1 1.0 OD2 A:ASP427 2.5 23.9 1.0 OD1 A:ASP399 2.6 39.8 1.0 CG A:ASP427 2.8 25.9 1.0 CG A:ASP399 2.9 43.2 1.0 C A:GLU401 3.4 21.9 1.0 CG A:ASN428 3.4 35.2 1.0 CG A:ASP490 3.6 26.9 1.0 ND2 A:ASN428 3.9 37.5 1.0 ND2 A:ASN494 3.9 23.0 1.0 CA A:GLU401 4.1 25.0 1.0 CB A:GLU401 4.2 33.5 1.0 CB A:ASP490 4.2 25.4 1.0 N A:GLU401 4.3 28.1 1.0 CB A:ASP427 4.3 25.4 1.0 N A:ASN428 4.4 21.5 1.0 N A:ARG402 4.4 18.0 1.0 CB A:ASP399 4.4 44.1 1.0 C A:ARG402 4.4 22.1 1.0 O A:HOH907 4.5 32.7 1.0 OG A:SER429 4.5 26.9 1.0 N A:SER429 4.5 24.8 1.0 CA A:ARG402 4.5 18.5 1.0 N A:PRO403 4.5 21.7 1.0 OD1 A:ASP490 4.6 24.3 1.0 CB A:SER429 4.6 28.9 1.0 CB A:ASN428 4.7 28.7 1.0 CD A:PRO403 4.8 17.0 1.0 O A:ARG402 4.8 23.6 1.0 CG A:ASN494 4.9 24.8 1.0 O A:HOH844 4.9 32.7 1.0 CB A:ASN494 4.9 20.0 1.0 CA A:ASP427 4.9 22.5 1.0 CG A:GLU401 4.9 39.3 1.0 CA A:ASN428 5.0 28.0 1.0 C A:ASP427 5.0 23.5 1.0

T.M.Iverson, T.M.Iverson. N/A N/A.