Atomistry » Calcium » PDB 6e48-6eku » 6efc
Atomistry »
  Calcium »
    PDB 6e48-6eku »
      6efc »

Calcium in PDB 6efc: Hsa Siglec + Unique Domains (Unliganded)

Protein crystallography data

The structure of Hsa Siglec + Unique Domains (Unliganded), PDB code: 6efc was solved by T.M.Iverson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.45 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.635, 58.173, 75.973, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 17.9

Other elements in 6efc:

The structure of Hsa Siglec + Unique Domains (Unliganded) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Hsa Siglec + Unique Domains (Unliganded) (pdb code 6efc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Hsa Siglec + Unique Domains (Unliganded), PDB code: 6efc:

Calcium binding site 1 out of 1 in 6efc

Go back to Calcium Binding Sites List in 6efc
Calcium binding site 1 out of 1 in the Hsa Siglec + Unique Domains (Unliganded)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Hsa Siglec + Unique Domains (Unliganded) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:18.6
occ:1.00
O A:GLU247 2.3 19.1 1.0
OD1 A:ASN273 2.3 20.4 1.0
OD2 A:ASP346 2.3 20.0 1.0
OD2 A:ASP245 2.4 22.6 1.0
OD1 A:ASP272 2.5 17.1 1.0
OD2 A:ASP272 2.5 18.2 1.0
OD1 A:ASP245 2.5 23.2 1.0
CG A:ASP272 2.8 16.9 1.0
CG A:ASP245 2.8 23.7 1.0
CG A:ASN273 3.4 21.8 1.0
CG A:ASP346 3.4 20.5 1.0
C A:GLU247 3.4 20.0 1.0
HD22 A:ASN350 3.5 28.2 1.0
HB3 A:GLU247 3.5 28.8 1.0
HB3 A:ASP346 3.6 24.3 1.0
H A:SER274 3.6 20.5 1.0
H A:ASN273 3.6 20.6 1.0
HD21 A:ASN273 3.7 30.2 1.0
H A:GLU247 3.7 29.0 1.0
HB2 A:ASP346 3.7 24.3 1.0
HB3 A:SER274 3.8 22.4 1.0
CB A:ASP346 3.8 20.2 1.0
ND2 A:ASN273 4.0 25.1 1.0
HG A:SER274 4.1 21.6 1.0
HA A:ALA248 4.2 23.0 1.0
CA A:GLU247 4.2 22.7 1.0
N A:ASN273 4.2 17.2 1.0
N A:GLU247 4.2 24.2 1.0
ND2 A:ASN350 4.3 23.5 1.0
HD3 A:PRO249 4.3 20.0 1.0
HB2 A:ASN350 4.3 26.9 1.0
CB A:GLU247 4.3 24.0 1.0
N A:SER274 4.3 17.1 1.0
CB A:ASP272 4.4 16.5 1.0
CB A:ASP245 4.4 26.5 1.0
HG2 A:GLU247 4.4 30.1 1.0
O A:HOH622 4.4 24.8 1.0
N A:ALA248 4.4 20.5 1.0
OD1 A:ASP346 4.5 20.8 1.0
C A:ALA248 4.5 17.3 1.0
O A:HOH602 4.6 18.1 1.0
CB A:SER274 4.6 18.7 1.0
CA A:ALA248 4.6 19.2 1.0
HD21 A:ASN350 4.6 28.2 1.0
CB A:ASN273 4.6 18.8 1.0
OG A:SER274 4.6 18.0 1.0
HB3 A:ASP245 4.7 31.8 1.0
HA A:ASP272 4.7 18.4 1.0
HB3 A:ASP272 4.8 19.8 1.0
CA A:ASN273 4.8 17.2 1.0
HB2 A:ASP245 4.8 31.8 1.0
O A:ALA248 4.8 18.2 1.0
HD22 A:ASN273 4.8 30.2 1.0
HB2 A:ASP272 4.8 19.8 1.0
N A:PRO249 4.8 16.2 1.0
HG3 A:PRO249 4.8 20.0 1.0
CG A:GLU247 4.9 25.1 1.0
CD A:PRO249 5.0 16.7 1.0
C A:ASN273 5.0 17.6 1.0
CA A:ASP272 5.0 15.4 1.0
C A:ASP272 5.0 16.1 1.0
HB3 A:ASN273 5.0 22.6 1.0

Reference:

T.M.Iverson, T.M.Iverson. N/A N/A.
Page generated: Mon Jul 15 18:20:38 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy