Calcium in PDB 6efc: Hsa Siglec + Unique Domains (Unliganded)
Protein crystallography data
The structure of Hsa Siglec + Unique Domains (Unliganded), PDB code: 6efc
was solved by
T.M.Iverson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.45 /
1.40
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
46.635,
58.173,
75.973,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
14.6 /
17.9
|
Other elements in 6efc:
The structure of Hsa Siglec + Unique Domains (Unliganded) also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Hsa Siglec + Unique Domains (Unliganded)
(pdb code 6efc). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the
Hsa Siglec + Unique Domains (Unliganded), PDB code: 6efc:
Calcium binding site 1 out
of 1 in 6efc
Go back to
Calcium Binding Sites List in 6efc
Calcium binding site 1 out
of 1 in the Hsa Siglec + Unique Domains (Unliganded)
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Hsa Siglec + Unique Domains (Unliganded) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:18.6
occ:1.00
|
O
|
A:GLU247
|
2.3
|
19.1
|
1.0
|
OD1
|
A:ASN273
|
2.3
|
20.4
|
1.0
|
OD2
|
A:ASP346
|
2.3
|
20.0
|
1.0
|
OD2
|
A:ASP245
|
2.4
|
22.6
|
1.0
|
OD1
|
A:ASP272
|
2.5
|
17.1
|
1.0
|
OD2
|
A:ASP272
|
2.5
|
18.2
|
1.0
|
OD1
|
A:ASP245
|
2.5
|
23.2
|
1.0
|
CG
|
A:ASP272
|
2.8
|
16.9
|
1.0
|
CG
|
A:ASP245
|
2.8
|
23.7
|
1.0
|
CG
|
A:ASN273
|
3.4
|
21.8
|
1.0
|
CG
|
A:ASP346
|
3.4
|
20.5
|
1.0
|
C
|
A:GLU247
|
3.4
|
20.0
|
1.0
|
HD22
|
A:ASN350
|
3.5
|
28.2
|
1.0
|
HB3
|
A:GLU247
|
3.5
|
28.8
|
1.0
|
HB3
|
A:ASP346
|
3.6
|
24.3
|
1.0
|
H
|
A:SER274
|
3.6
|
20.5
|
1.0
|
H
|
A:ASN273
|
3.6
|
20.6
|
1.0
|
HD21
|
A:ASN273
|
3.7
|
30.2
|
1.0
|
H
|
A:GLU247
|
3.7
|
29.0
|
1.0
|
HB2
|
A:ASP346
|
3.7
|
24.3
|
1.0
|
HB3
|
A:SER274
|
3.8
|
22.4
|
1.0
|
CB
|
A:ASP346
|
3.8
|
20.2
|
1.0
|
ND2
|
A:ASN273
|
4.0
|
25.1
|
1.0
|
HG
|
A:SER274
|
4.1
|
21.6
|
1.0
|
HA
|
A:ALA248
|
4.2
|
23.0
|
1.0
|
CA
|
A:GLU247
|
4.2
|
22.7
|
1.0
|
N
|
A:ASN273
|
4.2
|
17.2
|
1.0
|
N
|
A:GLU247
|
4.2
|
24.2
|
1.0
|
ND2
|
A:ASN350
|
4.3
|
23.5
|
1.0
|
HD3
|
A:PRO249
|
4.3
|
20.0
|
1.0
|
HB2
|
A:ASN350
|
4.3
|
26.9
|
1.0
|
CB
|
A:GLU247
|
4.3
|
24.0
|
1.0
|
N
|
A:SER274
|
4.3
|
17.1
|
1.0
|
CB
|
A:ASP272
|
4.4
|
16.5
|
1.0
|
CB
|
A:ASP245
|
4.4
|
26.5
|
1.0
|
HG2
|
A:GLU247
|
4.4
|
30.1
|
1.0
|
O
|
A:HOH622
|
4.4
|
24.8
|
1.0
|
N
|
A:ALA248
|
4.4
|
20.5
|
1.0
|
OD1
|
A:ASP346
|
4.5
|
20.8
|
1.0
|
C
|
A:ALA248
|
4.5
|
17.3
|
1.0
|
O
|
A:HOH602
|
4.6
|
18.1
|
1.0
|
CB
|
A:SER274
|
4.6
|
18.7
|
1.0
|
CA
|
A:ALA248
|
4.6
|
19.2
|
1.0
|
HD21
|
A:ASN350
|
4.6
|
28.2
|
1.0
|
CB
|
A:ASN273
|
4.6
|
18.8
|
1.0
|
OG
|
A:SER274
|
4.6
|
18.0
|
1.0
|
HB3
|
A:ASP245
|
4.7
|
31.8
|
1.0
|
HA
|
A:ASP272
|
4.7
|
18.4
|
1.0
|
HB3
|
A:ASP272
|
4.8
|
19.8
|
1.0
|
CA
|
A:ASN273
|
4.8
|
17.2
|
1.0
|
HB2
|
A:ASP245
|
4.8
|
31.8
|
1.0
|
O
|
A:ALA248
|
4.8
|
18.2
|
1.0
|
HD22
|
A:ASN273
|
4.8
|
30.2
|
1.0
|
HB2
|
A:ASP272
|
4.8
|
19.8
|
1.0
|
N
|
A:PRO249
|
4.8
|
16.2
|
1.0
|
HG3
|
A:PRO249
|
4.8
|
20.0
|
1.0
|
CG
|
A:GLU247
|
4.9
|
25.1
|
1.0
|
CD
|
A:PRO249
|
5.0
|
16.7
|
1.0
|
C
|
A:ASN273
|
5.0
|
17.6
|
1.0
|
CA
|
A:ASP272
|
5.0
|
15.4
|
1.0
|
C
|
A:ASP272
|
5.0
|
16.1
|
1.0
|
HB3
|
A:ASN273
|
5.0
|
22.6
|
1.0
|
|
Reference:
T.M.Iverson,
T.M.Iverson.
N/A N/A.
Page generated: Sat Dec 12 06:04:44 2020
|