Calcium in PDB 6eff: NCTC10712
Protein crystallography data
The structure of NCTC10712, PDB code: 6eff
was solved by
T.M.Iverson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
47.24 /
1.60
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
39.786,
48.268,
99.823,
101.84,
91.39,
89.90
|
|
R / Rfree (%)
|
18 /
20.8
|
Calcium Binding Sites:
The binding sites of Calcium atom in the NCTC10712
(pdb code 6eff). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
NCTC10712, PDB code: 6eff:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 6eff
Go back to
Calcium Binding Sites List in 6eff
Calcium binding site 1 out
of 8 in the NCTC10712
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of NCTC10712 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:18.0
occ:1.00
|
OD2
|
A:ASP244
|
2.3
|
23.0
|
1.0
|
|
O
|
A:GLU246
|
2.3
|
21.9
|
1.0
|
|
OD2
|
A:ASP344
|
2.3
|
21.9
|
1.0
|
|
OD1
|
A:ASN272
|
2.4
|
22.2
|
1.0
|
|
OD1
|
A:ASP271
|
2.4
|
17.7
|
1.0
|
|
OD2
|
A:ASP271
|
2.5
|
15.6
|
1.0
|
|
OD1
|
A:ASP244
|
2.6
|
18.8
|
1.0
|
|
CG
|
A:ASP271
|
2.8
|
19.9
|
1.0
|
|
CG
|
A:ASP244
|
2.8
|
21.1
|
1.0
|
|
CG
|
A:ASP344
|
3.4
|
16.9
|
1.0
|
|
HD22
|
A:ASN348
|
3.4
|
28.0
|
1.0
|
|
C
|
A:GLU246
|
3.5
|
20.4
|
1.0
|
|
CG
|
A:ASN272
|
3.5
|
18.0
|
1.0
|
|
HB3
|
A:GLU246
|
3.5
|
24.6
|
1.0
|
|
HB3
|
A:ASP344
|
3.6
|
19.5
|
1.0
|
|
H
|
A:SER273
|
3.6
|
20.6
|
1.0
|
|
HB2
|
A:ASP344
|
3.7
|
19.5
|
1.0
|
|
H
|
A:GLU246
|
3.7
|
27.4
|
1.0
|
|
H
|
A:ASN272
|
3.7
|
23.8
|
1.0
|
|
HD21
|
A:ASN272
|
3.7
|
23.1
|
1.0
|
|
CB
|
A:ASP344
|
3.8
|
16.3
|
1.0
|
|
HB3
|
A:SER273
|
3.8
|
21.0
|
1.0
|
|
ND2
|
A:ASN272
|
4.0
|
19.3
|
1.0
|
|
HG
|
A:SER273
|
4.1
|
23.3
|
1.0
|
|
HD3
|
A:PRO248
|
4.2
|
17.4
|
1.0
|
|
HB2
|
A:ASN348
|
4.2
|
20.9
|
1.0
|
|
CA
|
A:GLU246
|
4.2
|
20.6
|
1.0
|
|
N
|
A:GLU246
|
4.2
|
22.8
|
1.0
|
|
HA
|
A:ALA247
|
4.2
|
28.2
|
1.0
|
|
ND2
|
A:ASN348
|
4.3
|
23.4
|
1.0
|
|
CB
|
A:ASP271
|
4.3
|
17.4
|
1.0
|
|
N
|
A:ASN272
|
4.3
|
19.8
|
1.0
|
|
CB
|
A:ASP244
|
4.3
|
20.7
|
1.0
|
|
CB
|
A:GLU246
|
4.3
|
20.5
|
1.0
|
|
N
|
A:SER273
|
4.4
|
17.2
|
1.0
|
|
OD1
|
A:ASP344
|
4.5
|
19.5
|
1.0
|
|
N
|
A:ALA247
|
4.5
|
18.2
|
1.0
|
|
O
|
A:HOH663
|
4.6
|
31.8
|
1.0
|
|
HB3
|
A:ASP244
|
4.6
|
24.8
|
1.0
|
|
CB
|
A:SER273
|
4.6
|
17.5
|
1.0
|
|
OG
|
A:SER273
|
4.6
|
19.4
|
1.0
|
|
O
|
A:HOH679
|
4.6
|
17.2
|
1.0
|
|
C
|
A:ALA247
|
4.6
|
17.7
|
1.0
|
|
HG2
|
A:GLU246
|
4.6
|
25.0
|
1.0
|
|
HD21
|
A:ASN348
|
4.7
|
28.0
|
1.0
|
|
CA
|
A:ALA247
|
4.7
|
23.5
|
1.0
|
|
HB2
|
A:ASP244
|
4.7
|
24.8
|
1.0
|
|
HB2
|
A:ASP271
|
4.7
|
20.9
|
1.0
|
|
HB3
|
A:ASP271
|
4.7
|
20.9
|
1.0
|
|
HA
|
A:ASP271
|
4.7
|
18.4
|
1.0
|
|
HG3
|
A:PRO248
|
4.7
|
18.3
|
1.0
|
|
CB
|
A:ASN272
|
4.7
|
21.6
|
1.0
|
|
N
|
A:PRO248
|
4.8
|
15.2
|
1.0
|
|
HD22
|
A:ASN272
|
4.9
|
23.1
|
1.0
|
|
CD
|
A:PRO248
|
4.9
|
14.5
|
1.0
|
|
O
|
A:ALA247
|
4.9
|
17.4
|
1.0
|
|
CA
|
A:ASP271
|
4.9
|
15.3
|
1.0
|
|
CA
|
A:ASN272
|
4.9
|
21.5
|
1.0
|
|
C
|
A:ASP271
|
5.0
|
19.9
|
1.0
|
|
Calcium binding site 2 out
of 8 in 6eff
Go back to
Calcium Binding Sites List in 6eff
Calcium binding site 2 out
of 8 in the NCTC10712
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of NCTC10712 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:29.8
occ:1.00
|
O
|
A:ASN372
|
2.3
|
15.8
|
1.0
|
|
O
|
A:TYR375
|
2.4
|
18.1
|
1.0
|
|
OD2
|
A:ASP434
|
2.4
|
15.6
|
1.0
|
|
O
|
A:HOH704
|
2.5
|
28.2
|
1.0
|
|
O
|
A:HOH787
|
2.6
|
26.3
|
1.0
|
|
O
|
A:HOH762
|
2.7
|
37.5
|
1.0
|
|
OD1
|
A:ASP434
|
2.8
|
22.0
|
1.0
|
|
CG
|
A:ASP434
|
2.9
|
17.6
|
1.0
|
|
C
|
A:ASN372
|
3.3
|
16.3
|
1.0
|
|
HB2
|
A:ASN372
|
3.4
|
16.9
|
1.0
|
|
HD3
|
A:PRO377
|
3.5
|
20.9
|
1.0
|
|
C
|
A:TYR375
|
3.5
|
20.2
|
1.0
|
|
HA
|
A:GLU373
|
3.7
|
17.4
|
1.0
|
|
HA
|
A:ASP376
|
3.7
|
24.3
|
1.0
|
|
H
|
A:TYR375
|
3.8
|
17.4
|
1.0
|
|
HH
|
A:TYR428
|
3.9
|
17.7
|
1.0
|
|
HD2
|
A:PRO377
|
4.0
|
20.9
|
1.0
|
|
HA
|
A:ASN372
|
4.1
|
16.0
|
1.0
|
|
CA
|
A:ASN372
|
4.1
|
13.3
|
1.0
|
|
CB
|
A:ASN372
|
4.2
|
14.1
|
1.0
|
|
CD
|
A:PRO377
|
4.2
|
17.4
|
1.0
|
|
N
|
A:GLU373
|
4.2
|
12.8
|
1.0
|
|
HB2
|
A:TYR375
|
4.3
|
17.4
|
1.0
|
|
CA
|
A:GLU373
|
4.3
|
14.5
|
1.0
|
|
OH
|
A:TYR428
|
4.4
|
14.8
|
1.0
|
|
N
|
A:TYR375
|
4.4
|
14.5
|
1.0
|
|
CB
|
A:ASP434
|
4.4
|
11.7
|
1.0
|
|
N
|
A:ASP376
|
4.4
|
18.2
|
1.0
|
|
CA
|
A:TYR375
|
4.4
|
15.6
|
1.0
|
|
CA
|
A:ASP376
|
4.5
|
20.2
|
1.0
|
|
HB3
|
A:ASP434
|
4.6
|
14.1
|
1.0
|
|
O
|
A:HOH604
|
4.6
|
33.1
|
1.0
|
|
HE2
|
A:TYR428
|
4.7
|
13.7
|
1.0
|
|
C
|
A:GLU373
|
4.7
|
13.5
|
1.0
|
|
HB2
|
A:ASP434
|
4.7
|
14.1
|
1.0
|
|
CG
|
A:ASN372
|
4.8
|
14.9
|
1.0
|
|
CB
|
A:TYR375
|
4.9
|
14.5
|
1.0
|
|
HB3
|
A:ASN372
|
4.9
|
16.9
|
1.0
|
|
Calcium binding site 3 out
of 8 in 6eff
Go back to
Calcium Binding Sites List in 6eff
Calcium binding site 3 out
of 8 in the NCTC10712
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of NCTC10712 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca502
b:13.8
occ:1.00
|
O
|
B:GLU246
|
2.3
|
16.5
|
1.0
|
|
OD1
|
B:ASN272
|
2.3
|
16.5
|
1.0
|
|
OD2
|
B:ASP344
|
2.3
|
18.8
|
1.0
|
|
OD2
|
B:ASP244
|
2.4
|
18.0
|
1.0
|
|
OD1
|
B:ASP271
|
2.4
|
14.0
|
1.0
|
|
OD2
|
B:ASP271
|
2.4
|
13.0
|
1.0
|
|
OD1
|
B:ASP244
|
2.6
|
17.2
|
1.0
|
|
CG
|
B:ASP271
|
2.7
|
14.4
|
1.0
|
|
CG
|
B:ASP244
|
2.8
|
16.6
|
1.0
|
|
HD22
|
B:ASN348
|
3.4
|
25.3
|
1.0
|
|
CG
|
B:ASN272
|
3.4
|
22.0
|
1.0
|
|
C
|
B:GLU246
|
3.4
|
18.9
|
1.0
|
|
CG
|
B:ASP344
|
3.4
|
14.2
|
1.0
|
|
HB3
|
B:GLU246
|
3.5
|
23.2
|
1.0
|
|
H
|
B:SER273
|
3.6
|
17.2
|
1.0
|
|
H
|
B:GLU246
|
3.6
|
23.1
|
1.0
|
|
HB3
|
B:ASP344
|
3.6
|
20.4
|
1.0
|
|
HD21
|
B:ASN272
|
3.6
|
25.0
|
1.0
|
|
H
|
B:ASN272
|
3.7
|
20.0
|
1.0
|
|
HB2
|
B:ASP344
|
3.8
|
20.4
|
1.0
|
|
CB
|
B:ASP344
|
3.9
|
17.0
|
1.0
|
|
HG
|
B:SER273
|
3.9
|
22.6
|
1.0
|
|
HB3
|
B:SER273
|
3.9
|
22.0
|
1.0
|
|
ND2
|
B:ASN272
|
3.9
|
20.9
|
1.0
|
|
HB2
|
B:ASN348
|
4.1
|
24.7
|
1.0
|
|
HD3
|
B:PRO248
|
4.2
|
17.5
|
1.0
|
|
ND2
|
B:ASN348
|
4.2
|
21.1
|
1.0
|
|
CA
|
B:GLU246
|
4.2
|
20.0
|
1.0
|
|
N
|
B:GLU246
|
4.2
|
19.3
|
1.0
|
|
CB
|
B:ASP271
|
4.2
|
12.8
|
1.0
|
|
N
|
B:ASN272
|
4.2
|
16.6
|
1.0
|
|
HA
|
B:ALA247
|
4.2
|
21.1
|
1.0
|
|
CB
|
B:GLU246
|
4.3
|
19.3
|
1.0
|
|
CB
|
B:ASP244
|
4.3
|
14.9
|
1.0
|
|
N
|
B:SER273
|
4.3
|
14.4
|
1.0
|
|
OG
|
B:SER273
|
4.5
|
18.8
|
1.0
|
|
N
|
B:ALA247
|
4.5
|
16.2
|
1.0
|
|
OD1
|
B:ASP344
|
4.5
|
18.1
|
1.0
|
|
C
|
B:ALA247
|
4.6
|
14.0
|
1.0
|
|
O
|
B:HOH721
|
4.6
|
16.1
|
1.0
|
|
O
|
B:HOH683
|
4.6
|
20.9
|
1.0
|
|
HD21
|
B:ASN348
|
4.6
|
25.3
|
1.0
|
|
HB3
|
B:ASP244
|
4.6
|
17.8
|
1.0
|
|
CB
|
B:SER273
|
4.6
|
18.3
|
1.0
|
|
HG3
|
B:PRO248
|
4.6
|
17.3
|
1.0
|
|
CA
|
B:ALA247
|
4.6
|
17.6
|
1.0
|
|
HB3
|
B:ASP271
|
4.6
|
15.4
|
1.0
|
|
HA
|
B:ASP271
|
4.6
|
18.7
|
1.0
|
|
CB
|
B:ASN272
|
4.7
|
21.7
|
1.0
|
|
HB2
|
B:ASP271
|
4.7
|
15.4
|
1.0
|
|
HB2
|
B:ASP244
|
4.7
|
17.8
|
1.0
|
|
N
|
B:PRO248
|
4.8
|
12.0
|
1.0
|
|
HG2
|
B:GLU246
|
4.8
|
29.3
|
1.0
|
|
HD22
|
B:ASN272
|
4.8
|
25.0
|
1.0
|
|
CB
|
B:ASN348
|
4.8
|
20.6
|
1.0
|
|
O
|
B:ALA247
|
4.8
|
16.3
|
1.0
|
|
CD
|
B:PRO248
|
4.9
|
14.6
|
1.0
|
|
CA
|
B:ASP271
|
4.9
|
15.6
|
1.0
|
|
CA
|
B:ASN272
|
4.9
|
18.7
|
1.0
|
|
C
|
B:ASP271
|
4.9
|
16.0
|
1.0
|
|
HB2
|
B:GLU246
|
5.0
|
23.2
|
1.0
|
|
HB3
|
B:ASN348
|
5.0
|
24.7
|
1.0
|
|
HA
|
B:PRO248
|
5.0
|
15.9
|
1.0
|
|
CG
|
B:ASN348
|
5.0
|
19.8
|
1.0
|
|
Calcium binding site 4 out
of 8 in 6eff
Go back to
Calcium Binding Sites List in 6eff
Calcium binding site 4 out
of 8 in the NCTC10712
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of NCTC10712 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca503
b:31.3
occ:1.00
|
O
|
B:TYR375
|
2.3
|
19.1
|
1.0
|
|
O
|
B:ASN372
|
2.3
|
17.9
|
1.0
|
|
O
|
B:HOH792
|
2.4
|
25.8
|
1.0
|
|
OD2
|
B:ASP434
|
2.4
|
18.4
|
1.0
|
|
O
|
B:HOH780
|
2.6
|
35.3
|
1.0
|
|
O
|
B:HOH755
|
2.7
|
37.4
|
1.0
|
|
OD1
|
B:ASP434
|
2.9
|
26.9
|
1.0
|
|
CG
|
B:ASP434
|
3.0
|
19.4
|
1.0
|
|
C
|
B:ASN372
|
3.4
|
17.2
|
1.0
|
|
HD3
|
B:PRO377
|
3.5
|
21.5
|
1.0
|
|
C
|
B:TYR375
|
3.5
|
16.0
|
1.0
|
|
HB2
|
B:ASN372
|
3.5
|
18.4
|
1.0
|
|
HA
|
B:ASP376
|
3.7
|
24.9
|
1.0
|
|
H
|
B:TYR375
|
3.8
|
12.7
|
0.6
|
|
H
|
B:TYR375
|
3.8
|
12.7
|
0.4
|
|
HA
|
B:GLU373
|
3.8
|
17.9
|
1.0
|
|
HH
|
B:TYR428
|
3.9
|
17.2
|
1.0
|
|
HD2
|
B:PRO377
|
4.0
|
21.5
|
1.0
|
|
CD
|
B:PRO377
|
4.2
|
17.9
|
1.0
|
|
HA
|
B:ASN372
|
4.2
|
18.0
|
1.0
|
|
CA
|
B:ASN372
|
4.2
|
15.0
|
1.0
|
|
HB2
|
B:TYR375
|
4.2
|
18.0
|
1.0
|
|
CB
|
B:ASN372
|
4.3
|
15.3
|
1.0
|
|
OH
|
B:TYR428
|
4.3
|
14.3
|
1.0
|
|
N
|
B:GLU373
|
4.3
|
14.4
|
1.0
|
|
N
|
B:TYR375
|
4.4
|
10.5
|
1.0
|
|
N
|
B:ASP376
|
4.4
|
15.2
|
1.0
|
|
CA
|
B:TYR375
|
4.4
|
14.3
|
1.0
|
|
CA
|
B:GLU373
|
4.4
|
14.9
|
1.0
|
|
CB
|
B:ASP434
|
4.4
|
13.6
|
1.0
|
|
CA
|
B:ASP376
|
4.5
|
20.7
|
1.0
|
|
O
|
B:HOH604
|
4.5
|
32.4
|
1.0
|
|
HB3
|
B:ASP434
|
4.6
|
16.3
|
1.0
|
|
C
|
B:GLU373
|
4.8
|
15.8
|
1.0
|
|
HE1
|
B:TYR428
|
4.8
|
9.9
|
1.0
|
|
HB2
|
B:ASP434
|
4.8
|
16.3
|
1.0
|
|
CB
|
B:TYR375
|
4.8
|
15.0
|
1.0
|
|
CG
|
B:ASN372
|
4.9
|
15.2
|
1.0
|
|
Calcium binding site 5 out
of 8 in 6eff
Go back to
Calcium Binding Sites List in 6eff
Calcium binding site 5 out
of 8 in the NCTC10712
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of NCTC10712 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca501
b:15.3
occ:1.00
|
O
|
C:GLU246
|
2.2
|
18.4
|
1.0
|
|
OD1
|
C:ASN272
|
2.3
|
18.2
|
1.0
|
|
OD2
|
C:ASP344
|
2.3
|
14.9
|
1.0
|
|
OD2
|
C:ASP271
|
2.4
|
13.6
|
1.0
|
|
OD1
|
C:ASP244
|
2.5
|
18.4
|
1.0
|
|
OD2
|
C:ASP244
|
2.5
|
18.6
|
1.0
|
|
OD1
|
C:ASP271
|
2.5
|
16.9
|
1.0
|
|
CG
|
C:ASP271
|
2.8
|
15.1
|
1.0
|
|
CG
|
C:ASP244
|
2.8
|
20.0
|
1.0
|
|
CG
|
C:ASN272
|
3.4
|
21.2
|
1.0
|
|
CG
|
C:ASP344
|
3.4
|
16.7
|
1.0
|
|
C
|
C:GLU246
|
3.4
|
16.6
|
1.0
|
|
HD22
|
C:ASN348
|
3.5
|
19.6
|
1.0
|
|
HD21
|
C:ASN272
|
3.5
|
25.9
|
1.0
|
|
HB3
|
C:GLU246
|
3.6
|
23.3
|
1.0
|
|
HB3
|
C:ASP344
|
3.6
|
16.7
|
1.0
|
|
H
|
C:SER273
|
3.6
|
16.9
|
1.0
|
|
H
|
C:GLU246
|
3.6
|
25.8
|
1.0
|
|
HB2
|
C:ASP344
|
3.7
|
16.7
|
1.0
|
|
H
|
C:ASN272
|
3.7
|
20.4
|
1.0
|
|
HB3
|
C:SER273
|
3.8
|
19.8
|
1.0
|
|
CB
|
C:ASP344
|
3.8
|
13.9
|
1.0
|
|
ND2
|
C:ASN272
|
3.9
|
21.6
|
1.0
|
|
HG
|
C:SER273
|
4.1
|
21.4
|
1.0
|
|
HB2
|
C:ASN348
|
4.2
|
20.3
|
1.0
|
|
HA
|
C:ALA247
|
4.2
|
20.4
|
1.0
|
|
CA
|
C:GLU246
|
4.2
|
21.9
|
1.0
|
|
ND2
|
C:ASN348
|
4.2
|
16.3
|
1.0
|
|
N
|
C:GLU246
|
4.2
|
21.5
|
1.0
|
|
HD3
|
C:PRO248
|
4.3
|
20.6
|
1.0
|
|
O
|
C:HOH606
|
4.3
|
27.8
|
1.0
|
|
CB
|
C:ASP271
|
4.3
|
15.5
|
1.0
|
|
CB
|
C:GLU246
|
4.3
|
19.4
|
1.0
|
|
N
|
C:ASN272
|
4.3
|
17.0
|
1.0
|
|
CB
|
C:ASP244
|
4.3
|
20.5
|
1.0
|
|
N
|
C:SER273
|
4.4
|
14.1
|
1.0
|
|
N
|
C:ALA247
|
4.4
|
18.1
|
1.0
|
|
OD1
|
C:ASP344
|
4.5
|
18.5
|
1.0
|
|
HD21
|
C:ASN348
|
4.6
|
19.6
|
1.0
|
|
C
|
C:ALA247
|
4.6
|
17.6
|
1.0
|
|
OG
|
C:SER273
|
4.6
|
17.8
|
1.0
|
|
CB
|
C:SER273
|
4.6
|
16.5
|
1.0
|
|
CA
|
C:ALA247
|
4.6
|
17.0
|
1.0
|
|
HG2
|
C:GLU246
|
4.6
|
26.7
|
1.0
|
|
HB3
|
C:ASP244
|
4.7
|
24.6
|
1.0
|
|
O
|
C:HOH664
|
4.7
|
18.2
|
1.0
|
|
CB
|
C:ASN272
|
4.7
|
17.8
|
1.0
|
|
HB3
|
C:ASP271
|
4.7
|
18.6
|
1.0
|
|
HD22
|
C:ASN272
|
4.7
|
25.9
|
1.0
|
|
HB2
|
C:ASP271
|
4.7
|
18.6
|
1.0
|
|
HB2
|
C:ASP244
|
4.8
|
24.6
|
1.0
|
|
HA
|
C:ASP271
|
4.8
|
15.4
|
1.0
|
|
HG3
|
C:PRO248
|
4.8
|
20.1
|
1.0
|
|
N
|
C:PRO248
|
4.8
|
12.6
|
1.0
|
|
O
|
C:ALA247
|
4.8
|
14.1
|
1.0
|
|
CA
|
C:ASN272
|
4.9
|
16.8
|
1.0
|
|
HB3
|
C:ALA346
|
4.9
|
29.2
|
1.0
|
|
CD
|
C:PRO248
|
5.0
|
17.1
|
1.0
|
|
CB
|
C:ASN348
|
5.0
|
16.9
|
1.0
|
|
CA
|
C:ASP271
|
5.0
|
12.8
|
1.0
|
|
Calcium binding site 6 out
of 8 in 6eff
Go back to
Calcium Binding Sites List in 6eff
Calcium binding site 6 out
of 8 in the NCTC10712
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of NCTC10712 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca502
b:33.5
occ:1.00
|
O
|
C:TYR375
|
2.3
|
19.1
|
1.0
|
|
OD2
|
C:ASP434
|
2.4
|
17.4
|
1.0
|
|
O
|
C:ASN372
|
2.4
|
16.4
|
1.0
|
|
O
|
C:HOH721
|
2.4
|
31.6
|
1.0
|
|
O
|
C:HOH798
|
2.4
|
26.8
|
1.0
|
|
O
|
C:HOH771
|
2.6
|
32.5
|
1.0
|
|
OD1
|
C:ASP434
|
2.9
|
23.0
|
1.0
|
|
CG
|
C:ASP434
|
3.0
|
18.9
|
1.0
|
|
C
|
C:ASN372
|
3.4
|
16.3
|
1.0
|
|
HD3
|
C:PRO377
|
3.4
|
23.5
|
1.0
|
|
C
|
C:TYR375
|
3.5
|
19.9
|
1.0
|
|
HB2
|
C:ASN372
|
3.5
|
15.2
|
1.0
|
|
HA
|
C:ASP376
|
3.6
|
20.5
|
1.0
|
|
HA
|
C:GLU373
|
3.7
|
17.4
|
1.0
|
|
H
|
C:TYR375
|
3.7
|
17.5
|
1.0
|
|
O
|
C:HOH752
|
4.0
|
33.9
|
1.0
|
|
HH
|
C:TYR428
|
4.0
|
18.3
|
1.0
|
|
HD2
|
C:PRO377
|
4.1
|
23.5
|
1.0
|
|
HA
|
C:ASN372
|
4.2
|
16.1
|
1.0
|
|
CD
|
C:PRO377
|
4.2
|
19.6
|
1.0
|
|
CA
|
C:ASN372
|
4.2
|
13.4
|
1.0
|
|
HB2
|
C:TYR375
|
4.3
|
16.9
|
1.0
|
|
CB
|
C:ASN372
|
4.3
|
12.6
|
1.0
|
|
N
|
C:GLU373
|
4.3
|
14.6
|
1.0
|
|
CA
|
C:GLU373
|
4.3
|
14.5
|
1.0
|
|
N
|
C:TYR375
|
4.3
|
14.6
|
1.0
|
|
N
|
C:ASP376
|
4.4
|
17.2
|
1.0
|
|
CA
|
C:TYR375
|
4.4
|
15.2
|
1.0
|
|
CA
|
C:ASP376
|
4.4
|
17.1
|
1.0
|
|
OH
|
C:TYR428
|
4.4
|
15.3
|
1.0
|
|
CB
|
C:ASP434
|
4.5
|
12.3
|
1.0
|
|
O
|
C:HOH809
|
4.5
|
34.6
|
1.0
|
|
HB3
|
C:ASP434
|
4.7
|
14.7
|
1.0
|
|
C
|
C:GLU373
|
4.7
|
14.3
|
1.0
|
|
HB2
|
C:ASP434
|
4.8
|
14.7
|
1.0
|
|
CB
|
C:TYR375
|
4.8
|
14.1
|
1.0
|
|
HE2
|
C:TYR428
|
4.8
|
16.0
|
1.0
|
|
O
|
C:HOH612
|
4.9
|
36.6
|
1.0
|
|
CG
|
C:ASN372
|
5.0
|
12.1
|
1.0
|
|
Calcium binding site 7 out
of 8 in 6eff
Go back to
Calcium Binding Sites List in 6eff
Calcium binding site 7 out
of 8 in the NCTC10712
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of NCTC10712 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca501
b:18.1
occ:1.00
|
OD2
|
D:ASP344
|
2.2
|
19.9
|
1.0
|
|
O
|
D:GLU246
|
2.3
|
21.4
|
1.0
|
|
OD1
|
D:ASN272
|
2.3
|
20.5
|
1.0
|
|
OD1
|
D:ASP271
|
2.3
|
13.4
|
1.0
|
|
OD2
|
D:ASP244
|
2.4
|
20.1
|
1.0
|
|
OD2
|
D:ASP271
|
2.4
|
14.4
|
1.0
|
|
OD1
|
D:ASP244
|
2.5
|
17.5
|
1.0
|
|
CG
|
D:ASP271
|
2.7
|
16.2
|
1.0
|
|
CG
|
D:ASP244
|
2.8
|
17.8
|
1.0
|
|
HD22
|
D:ASN348
|
3.3
|
21.3
|
1.0
|
|
CG
|
D:ASP344
|
3.3
|
21.9
|
1.0
|
|
CG
|
D:ASN272
|
3.4
|
20.1
|
1.0
|
|
C
|
D:GLU246
|
3.5
|
16.4
|
1.0
|
|
H
|
D:SER273
|
3.5
|
18.7
|
1.0
|
|
HB3
|
D:ASP344
|
3.5
|
20.1
|
1.0
|
|
HB3
|
D:GLU246
|
3.6
|
28.0
|
1.0
|
|
H
|
D:ASN272
|
3.6
|
27.1
|
1.0
|
|
HD21
|
D:ASN272
|
3.6
|
30.4
|
1.0
|
|
HB2
|
D:ASP344
|
3.6
|
20.1
|
1.0
|
|
H
|
D:GLU246
|
3.7
|
23.1
|
1.0
|
|
CB
|
D:ASP344
|
3.8
|
16.7
|
1.0
|
|
HB3
|
D:SER273
|
3.9
|
20.1
|
1.0
|
|
ND2
|
D:ASN272
|
3.9
|
25.3
|
1.0
|
|
HG
|
D:SER273
|
4.0
|
26.9
|
1.0
|
|
HB2
|
D:ASN348
|
4.1
|
26.1
|
1.0
|
|
HD3
|
D:PRO248
|
4.1
|
19.1
|
1.0
|
|
ND2
|
D:ASN348
|
4.1
|
17.7
|
1.0
|
|
HA
|
D:ALA247
|
4.2
|
21.5
|
1.0
|
|
N
|
D:ASN272
|
4.2
|
22.6
|
1.0
|
|
CB
|
D:ASP271
|
4.2
|
14.6
|
1.0
|
|
CA
|
D:GLU246
|
4.2
|
19.5
|
1.0
|
|
N
|
D:GLU246
|
4.3
|
19.2
|
1.0
|
|
CB
|
D:ASP244
|
4.3
|
16.7
|
1.0
|
|
N
|
D:SER273
|
4.3
|
15.6
|
1.0
|
|
CB
|
D:GLU246
|
4.3
|
23.3
|
1.0
|
|
OD1
|
D:ASP344
|
4.4
|
21.4
|
1.0
|
|
N
|
D:ALA247
|
4.5
|
19.5
|
1.0
|
|
O
|
D:HOH609
|
4.5
|
28.4
|
1.0
|
|
HD21
|
D:ASN348
|
4.5
|
21.3
|
1.0
|
|
OG
|
D:SER273
|
4.5
|
22.4
|
1.0
|
|
C
|
D:ALA247
|
4.5
|
14.7
|
1.0
|
|
HG3
|
D:PRO248
|
4.6
|
24.6
|
1.0
|
|
HB3
|
D:ASP244
|
4.6
|
20.1
|
1.0
|
|
CB
|
D:SER273
|
4.6
|
16.7
|
1.0
|
|
CA
|
D:ALA247
|
4.6
|
17.9
|
1.0
|
|
HB3
|
D:ASP271
|
4.6
|
17.5
|
1.0
|
|
HA
|
D:ASP271
|
4.6
|
14.0
|
1.0
|
|
HB2
|
D:ASP271
|
4.7
|
17.5
|
1.0
|
|
O
|
D:HOH724
|
4.7
|
18.4
|
1.0
|
|
CB
|
D:ASN272
|
4.7
|
24.2
|
1.0
|
|
N
|
D:PRO248
|
4.7
|
15.6
|
1.0
|
|
HB2
|
D:ASP244
|
4.7
|
20.1
|
1.0
|
|
O
|
D:ALA247
|
4.8
|
16.8
|
1.0
|
|
HD22
|
D:ASN272
|
4.8
|
30.4
|
1.0
|
|
CD
|
D:PRO248
|
4.8
|
15.9
|
1.0
|
|
HG2
|
D:GLU246
|
4.8
|
28.3
|
1.0
|
|
CA
|
D:ASP271
|
4.9
|
11.6
|
1.0
|
|
CA
|
D:ASN272
|
4.9
|
20.4
|
1.0
|
|
CB
|
D:ASN348
|
4.9
|
21.8
|
1.0
|
|
C
|
D:ASP271
|
4.9
|
20.1
|
1.0
|
|
HA
|
D:PRO248
|
5.0
|
22.2
|
1.0
|
|
Calcium binding site 8 out
of 8 in 6eff
Go back to
Calcium Binding Sites List in 6eff
Calcium binding site 8 out
of 8 in the NCTC10712
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of NCTC10712 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca502
b:34.0
occ:1.00
|
O
|
D:ASN372
|
2.3
|
19.1
|
1.0
|
|
O
|
D:HOH755
|
2.4
|
37.8
|
1.0
|
|
O
|
D:TYR375
|
2.4
|
19.4
|
1.0
|
|
O
|
D:HOH789
|
2.5
|
28.2
|
1.0
|
|
OD2
|
D:ASP434
|
2.5
|
15.0
|
1.0
|
|
O
|
D:HOH753
|
2.6
|
33.8
|
1.0
|
|
OD1
|
D:ASP434
|
2.8
|
20.1
|
1.0
|
|
CG
|
D:ASP434
|
3.0
|
24.9
|
1.0
|
|
C
|
D:ASN372
|
3.4
|
16.9
|
1.0
|
|
HB2
|
D:ASN372
|
3.5
|
19.9
|
1.0
|
|
HD3
|
D:PRO377
|
3.5
|
21.3
|
1.0
|
|
C
|
D:TYR375
|
3.6
|
17.1
|
1.0
|
|
HA
|
D:GLU373
|
3.7
|
14.9
|
1.0
|
|
HA
|
D:ASP376
|
3.7
|
23.4
|
1.0
|
|
H
|
D:TYR375
|
3.8
|
17.7
|
1.0
|
|
HH
|
D:TYR428
|
4.0
|
16.0
|
1.0
|
|
HA
|
D:ASN372
|
4.2
|
14.7
|
1.0
|
|
HD2
|
D:PRO377
|
4.2
|
21.3
|
1.0
|
|
CA
|
D:ASN372
|
4.2
|
12.3
|
1.0
|
|
CB
|
D:ASN372
|
4.2
|
16.6
|
1.0
|
|
N
|
D:GLU373
|
4.3
|
13.2
|
1.0
|
|
CD
|
D:PRO377
|
4.3
|
17.7
|
1.0
|
|
CA
|
D:GLU373
|
4.3
|
12.4
|
1.0
|
|
HB2
|
D:TYR375
|
4.3
|
14.3
|
1.0
|
|
N
|
D:TYR375
|
4.4
|
14.8
|
1.0
|
|
OH
|
D:TYR428
|
4.4
|
13.3
|
1.0
|
|
CB
|
D:ASP434
|
4.4
|
12.1
|
1.0
|
|
N
|
D:ASP376
|
4.5
|
19.6
|
1.0
|
|
CA
|
D:TYR375
|
4.5
|
14.1
|
1.0
|
|
CA
|
D:ASP376
|
4.5
|
19.5
|
1.0
|
|
HB3
|
D:ASP434
|
4.6
|
14.5
|
1.0
|
|
C
|
D:GLU373
|
4.7
|
11.2
|
1.0
|
|
HE2
|
D:TYR428
|
4.8
|
14.2
|
1.0
|
|
HB2
|
D:ASP434
|
4.8
|
14.5
|
1.0
|
|
CG
|
D:ASN372
|
4.9
|
13.6
|
1.0
|
|
CB
|
D:TYR375
|
4.9
|
11.9
|
1.0
|
|
Reference:
T.M.Iverson,
T.M.Iverson.
N/A N/A.
Page generated: Sat Dec 12 06:04:46 2020
|
