Atomistry » Calcium » PDB 6elt-6f2y » 6ety
Atomistry »
  Calcium »
    PDB 6elt-6f2y »
      6ety »

Calcium in PDB 6ety: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor JHU3371

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor JHU3371

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor JHU3371:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor JHU3371, PDB code: 6ety was solved by C.Barinka, Z.Novakova, L.Motlova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.68
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.646, 130.720, 158.234, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 17.8

Other elements in 6ety:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor JHU3371 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor JHU3371 (pdb code 6ety). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor JHU3371, PDB code: 6ety:

Calcium binding site 1 out of 1 in 6ety

Go back to Calcium Binding Sites List in 6ety
Calcium binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor JHU3371


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Inhibitor JHU3371 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca818

b:20.3
occ:1.00
 OE2 A:GLU436 2.3 20.7 1.0
O A:TYR272 2.3 21.1 1.0
O A:THR269 2.4 20.8 1.0
OE1 A:GLU433 2.4 20.8 1.0
O A:HOH945 2.4 21.3 1.0
OG1 A:THR269 2.5 20.9 1.0
OE2 A:GLU433 2.5 20.9 1.0
CD A:GLU433 2.8 20.6 1.0
C A:THR269 3.3 20.5 1.0
CB A:THR269 3.3 21.1 1.0
C A:TYR272 3.4 19.9 1.0
CD A:GLU436 3.4 20.5 1.0
OE1 A:GLU436 3.9 20.2 1.0
CA A:THR269 3.9 20.7 1.0
N A:TYR272 4.0 20.1 1.0
CA A:PRO273 4.2 20.6 1.0
CB A:ASP266 4.2 21.2 1.0
N A:ALA274 4.2 20.4 1.0
N A:PRO273 4.3 20.4 1.0
N A:PRO270 4.3 21.0 1.0
CG A:GLU433 4.3 20.6 1.0
CA A:TYR272 4.3 20.5 1.0
C A:PRO273 4.4 21.9 1.0
CA A:PRO270 4.5 20.8 1.0
N A:GLY271 4.5 20.8 1.0
N A:ASP266 4.5 19.5 1.0
O A:ASP266 4.5 20.5 1.0
O A:ALA264 4.6 22.0 1.0
N A:THR269 4.6 20.9 1.0
CG A:GLU436 4.7 20.1 1.0
CG2 A:THR269 4.7 21.2 1.0
C A:PRO270 4.7 21.2 1.0
OD2 A:ASP266 4.8 24.3 1.0
CA A:ASP266 4.9 20.9 1.0
CB A:ALA274 4.9 21.9 1.0
CB A:GLU436 4.9 20.1 1.0

Reference:

C.Barinka, Z.Novakova, N.Hin, D.Bim, D.V.Ferraris, B.Duvall, G.Kabarriti, R.Tsukamoto, M.Budesinsky, L.Motlova, C.Rojas, B.S.Slusher, T.A.Rokob, L.Rulisek, T.Tsukamoto. Structural and Computational Basis For Potent Inhibition of Glutamate Carboxypeptidase II By Carbamate-Based Inhibitors. Bioorg.Med.Chem. V. 27 255 2019.
ISSN: ESSN 1464-3391
PubMed: 30552009
DOI: 10.1016/J.BMC.2018.11.022
Page generated: Wed Jul 9 13:54:13 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy