Calcium in PDB 6fat: The Crystal Structure of A Feruloyl Esterase C From Fusarium Oxysporum.
Protein crystallography data
The structure of The Crystal Structure of A Feruloyl Esterase C From Fusarium Oxysporum., PDB code: 6fat
was solved by
M.Dimarogona,
E.D.Chrysina,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
102.35 /
2.30
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
67.536,
87.467,
106.565,
90.00,
106.18,
90.00
|
R / Rfree (%)
|
20.7 /
23.5
|
Calcium Binding Sites:
The binding sites of Calcium atom in the The Crystal Structure of A Feruloyl Esterase C From Fusarium Oxysporum.
(pdb code 6fat). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
The Crystal Structure of A Feruloyl Esterase C From Fusarium Oxysporum., PDB code: 6fat:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 6fat
Go back to
Calcium Binding Sites List in 6fat
Calcium binding site 1 out
of 2 in the The Crystal Structure of A Feruloyl Esterase C From Fusarium Oxysporum.
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of The Crystal Structure of A Feruloyl Esterase C From Fusarium Oxysporum. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca613
b:33.5
occ:1.00
|
OD1
|
A:ASP270
|
2.3
|
33.9
|
1.0
|
O
|
A:ILE280
|
2.3
|
32.8
|
1.0
|
OD1
|
A:ASP278
|
2.3
|
34.5
|
1.0
|
OD1
|
A:ASP274
|
2.3
|
33.5
|
1.0
|
O
|
A:VAL276
|
2.3
|
34.5
|
1.0
|
O
|
A:HOH745
|
2.5
|
27.9
|
1.0
|
CG
|
A:ASP274
|
3.0
|
34.0
|
1.0
|
OD2
|
A:ASP274
|
3.0
|
34.4
|
1.0
|
CG
|
A:ASP278
|
3.4
|
34.8
|
1.0
|
CG
|
A:ASP270
|
3.4
|
34.2
|
1.0
|
C
|
A:ILE280
|
3.5
|
32.4
|
1.0
|
C
|
A:VAL276
|
3.5
|
35.1
|
1.0
|
OD2
|
A:ASP278
|
3.8
|
34.6
|
1.0
|
OD2
|
A:ASP270
|
3.9
|
34.0
|
1.0
|
CB
|
A:VAL276
|
4.1
|
35.1
|
1.0
|
N
|
A:ASP278
|
4.1
|
34.9
|
1.0
|
N
|
A:ILE280
|
4.1
|
32.9
|
1.0
|
O
|
A:ASP270
|
4.2
|
35.0
|
1.0
|
CA
|
A:VAL276
|
4.2
|
34.9
|
1.0
|
CA
|
A:ILE280
|
4.3
|
32.9
|
1.0
|
CB
|
A:ASP274
|
4.4
|
34.0
|
1.0
|
N
|
A:VAL276
|
4.5
|
34.6
|
1.0
|
C
|
A:ASP270
|
4.5
|
35.2
|
1.0
|
N
|
A:LEU281
|
4.5
|
31.9
|
1.0
|
CB
|
A:ILE280
|
4.5
|
33.1
|
1.0
|
N
|
A:ALA277
|
4.6
|
35.4
|
1.0
|
CG1
|
A:VAL276
|
4.6
|
35.2
|
1.0
|
CB
|
A:ASP278
|
4.6
|
34.7
|
1.0
|
CB
|
A:ASP270
|
4.6
|
34.3
|
1.0
|
CA
|
A:ASP270
|
4.7
|
34.7
|
1.0
|
CA
|
A:LEU281
|
4.7
|
31.5
|
1.0
|
N
|
A:GLU282
|
4.8
|
30.7
|
1.0
|
CA
|
A:ASP278
|
4.8
|
34.5
|
1.0
|
CA
|
A:ALA277
|
4.8
|
35.5
|
1.0
|
N
|
A:GLY279
|
4.9
|
33.8
|
1.0
|
|
Calcium binding site 2 out
of 2 in 6fat
Go back to
Calcium Binding Sites List in 6fat
Calcium binding site 2 out
of 2 in the The Crystal Structure of A Feruloyl Esterase C From Fusarium Oxysporum.
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of The Crystal Structure of A Feruloyl Esterase C From Fusarium Oxysporum. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca622
b:30.2
occ:1.00
|
OD1
|
B:ASP270
|
2.3
|
31.1
|
1.0
|
OD1
|
B:ASP278
|
2.3
|
30.7
|
1.0
|
OD1
|
B:ASP274
|
2.3
|
30.2
|
1.0
|
O
|
B:ILE280
|
2.3
|
30.8
|
1.0
|
O
|
B:VAL276
|
2.3
|
30.5
|
1.0
|
O
|
B:HOH799
|
2.4
|
25.7
|
1.0
|
CG
|
B:ASP274
|
3.0
|
30.4
|
1.0
|
OD2
|
B:ASP274
|
3.0
|
30.6
|
1.0
|
CG
|
B:ASP278
|
3.3
|
30.7
|
1.0
|
CG
|
B:ASP270
|
3.4
|
31.0
|
1.0
|
C
|
B:VAL276
|
3.5
|
30.6
|
1.0
|
C
|
B:ILE280
|
3.5
|
31.5
|
1.0
|
OD2
|
B:ASP278
|
3.7
|
30.3
|
1.0
|
OD2
|
B:ASP270
|
3.9
|
30.5
|
1.0
|
CB
|
B:VAL276
|
4.0
|
30.8
|
1.0
|
O
|
B:ASP270
|
4.1
|
32.2
|
1.0
|
N
|
B:ASP278
|
4.2
|
31.1
|
1.0
|
CA
|
B:VAL276
|
4.2
|
30.6
|
1.0
|
N
|
B:ILE280
|
4.2
|
31.4
|
1.0
|
CA
|
B:ILE280
|
4.3
|
31.5
|
1.0
|
C
|
B:ASP270
|
4.4
|
32.2
|
1.0
|
N
|
B:VAL276
|
4.4
|
30.7
|
1.0
|
CB
|
B:ASP274
|
4.4
|
30.4
|
1.0
|
CG1
|
B:VAL276
|
4.5
|
30.8
|
1.0
|
CB
|
B:ILE280
|
4.5
|
31.8
|
1.0
|
N
|
B:LEU281
|
4.5
|
31.6
|
1.0
|
CB
|
B:ASP278
|
4.6
|
30.7
|
1.0
|
N
|
B:ALA277
|
4.6
|
30.8
|
1.0
|
CB
|
B:ASP270
|
4.6
|
31.1
|
1.0
|
CA
|
B:ASP270
|
4.6
|
31.4
|
1.0
|
CA
|
B:LEU281
|
4.7
|
31.7
|
1.0
|
N
|
B:GLU282
|
4.8
|
31.5
|
1.0
|
CA
|
B:ASP278
|
4.8
|
30.9
|
1.0
|
CA
|
B:ALA277
|
4.9
|
31.0
|
1.0
|
OE2
|
B:GLU282
|
4.9
|
31.6
|
1.0
|
|
Reference:
M.Dimarogona,
E.D.Chrysina.
The Crystal Structure of A Feruloyl Esterase C From Fusarium Oxysporum. To Be Published.
Page generated: Tue Jul 16 07:41:34 2024
|