Calcium in PDB 6fqp: Crystal Structure of Tale Homeobox Domain Transcription Factor TGIF1 with Its Consensus Dna

The structure of Crystal Structure of Tale Homeobox Domain Transcription Factor TGIF1 with Its Consensus Dna, PDB code: 6fqp was solved by E.Guca, M.J.Macias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.54 / 2.42
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.851, 67.248, 102.315, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 24.1

The binding sites of Calcium atom in the Crystal Structure of Tale Homeobox Domain Transcription Factor TGIF1 with Its Consensus Dna (pdb code 6fqp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Tale Homeobox Domain Transcription Factor TGIF1 with Its Consensus Dna, PDB code: 6fqp:

Calcium binding site 1 out of 1 in the Crystal Structure of Tale Homeobox Domain Transcription Factor TGIF1 with Its Consensus Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Tale Homeobox Domain Transcription Factor TGIF1 with Its Consensus Dna within 5.0Å range: probe atom residue distance (Å) B Occ L:Ca101 b:87.2 occ:1.00 O6 M:DG8 2.3 35.5 1.0 O6 L:DG8 2.7 39.6 1.0 H42 L:DC9 3.0 52.6 1.0 O M:HOH209 3.3 40.0 1.0 C6 M:DG8 3.4 36.5 1.0 N4 L:DC9 3.6 43.1 1.0 H41 L:DC9 3.6 52.6 1.0 H42 M:DC9 3.6 50.3 1.0 O M:HOH215 3.6 36.8 1.0 C6 L:DG8 3.6 43.5 1.0 O L:HOH207 3.7 42.9 1.0 O L:HOH210 3.9 45.9 1.0 N4 M:DC9 4.0 41.2 1.0 N7 M:DG8 4.0 35.2 1.0 H41 M:DC9 4.1 50.3 1.0 C5 M:DG8 4.1 36.8 1.0 H62 M:DA7 4.2 42.3 1.0 C5 L:DG8 4.3 41.8 1.0 N7 L:DG8 4.3 42.9 1.0 N1 M:DG8 4.5 34.3 1.0 H1 M:DG8 4.6 42.0 1.0 N1 L:DG8 4.7 44.2 1.0 N6 M:DA7 4.7 34.5 1.0 H1 L:DG8 4.7 54.0 1.0 N7 M:DA7 4.7 36.4 1.0 C4 L:DC9 4.7 44.4 1.0

E.Guca, D.Sunol, L.Ruiz, A.Konkol, J.Cordero, C.Torner, E.Aragon, P.Martin-Malpartida, A.Riera, M.J.Macias. TGIF1 Homeodomain Interacts with Smad MH1 Domain and Represses Tgf-Beta Signaling. Nucleic Acids Res. V. 46 9220 2018.
ISSN: ESSN 1362-4962
PubMed: 30060237
DOI: 10.1093/NAR/GKY680