Calcium in PDB 6fsn: Catalytic Domain of Udp-Glucose Glycoprotein Glucosyltransferase From Chaetomium Thermophilum in Complex with Udp-Glucose (Conformation 1)

The structure of Catalytic Domain of Udp-Glucose Glycoprotein Glucosyltransferase From Chaetomium Thermophilum in Complex with Udp-Glucose (Conformation 1), PDB code: 6fsn was solved by P.Roversi, J.D.Le Cornu, J.Hill, D.S.Alonzi, N.Zitzmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	13.77 / 1.19
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	118.832, 118.832, 68.754, 90.00, 90.00, 120.00
R / Rfree (%)	21.1 / 22.7

The binding sites of Calcium atom in the Catalytic Domain of Udp-Glucose Glycoprotein Glucosyltransferase From Chaetomium Thermophilum in Complex with Udp-Glucose (Conformation 1) (pdb code 6fsn). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Catalytic Domain of Udp-Glucose Glycoprotein Glucosyltransferase From Chaetomium Thermophilum in Complex with Udp-Glucose (Conformation 1), PDB code: 6fsn:

Calcium binding site 1 out of 1 in the Catalytic Domain of Udp-Glucose Glycoprotein Glucosyltransferase From Chaetomium Thermophilum in Complex with Udp-Glucose (Conformation 1)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Catalytic Domain of Udp-Glucose Glycoprotein Glucosyltransferase From Chaetomium Thermophilum in Complex with Udp-Glucose (Conformation 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1502 b:16.5 occ:1.00 OD2 A:ASP1302 2.3 18.3 1.0 O A:HOH1619 2.3 22.5 1.0 OD1 A:ASP1435 2.4 17.3 1.0 O2' A:UPG1503 2.4 15.8 0.8 OD1 A:ASP1304 2.4 17.1 1.0 OD2 A:ASP1304 2.5 18.9 1.0 O2B A:UPG1503 2.5 16.0 0.8 CG A:ASP1304 2.8 15.8 1.0 HZ1 A:LYS1446 3.2 25.0 1.0 HO3' A:UPG1503 3.3 13.7 0.8 CG A:ASP1302 3.3 18.1 1.0 CG A:ASP1435 3.4 15.3 1.0 H3' A:UPG1503 3.4 16.5 0.8 C2' A:UPG1503 3.6 16.2 0.8 HB3 A:ASP1302 3.6 16.3 1.0 OD2 A:ASP1435 3.7 15.9 1.0 PB A:UPG1503 3.7 17.2 0.8 O3B A:UPG1503 3.8 17.1 0.8 C3' A:UPG1503 3.9 15.4 0.8 H A:LEU1436 4.0 14.9 1.0 CB A:ASP1302 4.0 16.5 1.0 HA A:CYS1437 4.0 18.6 1.0 O3' A:UPG1503 4.1 14.9 0.8 NZ A:LYS1446 4.2 23.0 1.0 OD1 A:ASP1302 4.2 19.8 1.0 C1' A:UPG1503 4.3 18.6 0.8 CB A:ASP1304 4.3 17.8 1.0 HB2 A:ALA1360 4.3 15.0 1.0 HB2 A:ASP1302 4.3 18.5 1.0 H A:ASP1304 4.3 7.2 1.0 O A:HOH1636 4.3 26.4 1.0 H2' A:UPG1503 4.4 16.1 0.8 HZ3 A:LYS1446 4.4 22.6 1.0 HZ2 A:LYS1446 4.4 22.9 1.0 O2A A:UPG1503 4.5 24.7 0.8 HB1 A:ALA1360 4.6 12.3 1.0 HB3 A:CYS1437 4.6 16.0 1.0 N A:LEU1436 4.6 15.8 1.0 HB3 A:ASP1304 4.6 18.2 1.0 H1' A:UPG1503 4.6 18.2 0.8 O3A A:UPG1503 4.7 17.9 0.8 CB A:ASP1435 4.7 14.1 1.0 HA A:ASP1435 4.7 14.0 1.0 C A:LEU1436 4.7 20.2 1.0 O1A A:UPG1503 4.8 21.0 0.8 O A:LEU1436 4.8 20.1 1.0 HB2 A:ASP1304 4.8 17.4 1.0 HE2 A:TYR1211 4.8 20.2 1.0 O1B A:UPG1503 4.8 18.3 0.8 N A:CYS1437 4.8 18.0 1.0 CA A:CYS1437 4.9 17.9 1.0 PA A:UPG1503 4.9 21.7 0.8 CB A:ALA1360 4.9 13.3 1.0 HB2 A:LEU1436 5.0 19.8 1.0 HG2 A:GLN1305 5.0 19.8 1.0

P.Roversi, N.Zitzmann, D.S.Alonzi, J.C.Hill, C.B.Lipp, J.D.Le Cornu. The Catalytic Domain of Uggt, the Eukaryotic Glycoprotein Secretion Checkpoint. To Be Published.