Calcium in PDB 6fu3: Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae

Enzymatic activity of Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae

All present enzymatic activity of Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae:
1.11.1.5;

Protein crystallography data

The structure of Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae, PDB code: 6fu3 was solved by A.L.Carvalho, M.J.Romao, S.Pauleta, C.Nobrega, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.26 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.942, 88.780, 93.122, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 25.5

Other elements in 6fu3:

The structure of Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae (pdb code 6fu3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae, PDB code: 6fu3:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6fu3

Go back to Calcium Binding Sites List in 6fu3
Calcium binding site 1 out of 2 in the Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:11.7
occ:1.00
 O A:HOH651 2.3 13.1 1.0
OD1 A:ASN83 2.4 12.5 1.0
O A:THR261 2.4 14.7 1.0
O A:PRO263 2.4 14.6 1.0
O A:HOH591 2.5 11.3 1.0
O A:HOH519 2.5 13.2 1.0
O A:HOH637 2.6 9.8 1.0
CG A:ASN83 3.4 13.6 1.0
C A:PRO263 3.6 14.9 1.0
C A:THR261 3.6 13.3 1.0
ND2 A:ASN83 4.0 13.7 1.0
CB A:THR261 4.2 10.9 1.0
C A:TYR262 4.2 14.8 1.0
OG1 A:THR261 4.3 10.8 1.0
N A:PRO263 4.3 15.0 1.0
CA A:TYR264 4.3 14.1 1.0
O A:SER84 4.4 11.6 1.0
N A:TYR264 4.4 14.9 1.0
CA A:TYR262 4.5 14.4 1.0
O A:TYR262 4.5 14.3 1.0
N A:TYR262 4.5 14.0 1.0
O1A A:HEC403 4.5 14.5 1.0
CA A:THR261 4.5 12.5 1.0
O A:HOH692 4.5 9.2 1.0
CD1 A:TYR264 4.6 13.1 1.0
CA A:PRO263 4.6 15.3 1.0
O A:HOH628 4.6 8.8 1.0
O2A A:HEC403 4.6 15.0 1.0
CB A:ASN83 4.7 13.8 1.0
O A:HOH669 4.8 22.1 1.0
CD A:PRO263 4.9 14.8 1.0
CGA A:HEC403 5.0 16.3 1.0

Calcium binding site 2 out of 2 in 6fu3

Go back to Calcium Binding Sites List in 6fu3
Calcium binding site 2 out of 2 in the Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:10.5
occ:1.00
 O B:THR261 2.3 10.7 1.0
OD1 B:ASN83 2.3 13.1 1.0
O B:PRO263 2.4 10.0 1.0
O B:HOH560 2.4 10.4 1.0
O B:HOH554 2.5 11.9 1.0
O B:HOH543 2.5 11.8 1.0
O B:HOH632 2.5 11.6 1.0
CG B:ASN83 3.4 13.1 1.0
C B:THR261 3.5 10.6 1.0
C B:PRO263 3.6 10.9 1.0
ND2 B:ASN83 3.9 13.8 1.0
C B:TYR262 4.2 10.9 1.0
CB B:THR261 4.3 10.7 1.0
OG1 B:THR261 4.3 10.5 1.0
CA B:TYR264 4.4 11.0 1.0
O B:SER84 4.4 11.1 1.0
O B:TYR262 4.4 11.3 1.0
N B:PRO263 4.4 11.3 1.0
N B:TYR262 4.4 10.6 1.0
N B:TYR264 4.4 11.2 1.0
CA B:TYR262 4.5 10.8 1.0
O B:HOH607 4.5 8.5 1.0
CA B:THR261 4.5 10.4 1.0
O2A B:HEC403 4.5 12.4 1.0
O B:HOH693 4.6 8.2 1.0
CD1 B:TYR264 4.6 11.2 1.0
O1A B:HEC403 4.7 14.4 1.0
CA B:PRO263 4.7 11.2 1.0
CB B:ASN83 4.8 13.1 1.0
O B:HOH605 4.9 17.9 1.0

Reference:

A.L.Carvalho, M.J.Romao, S.Pauleta, C.Nobrega. Structure of the Mixed-Valence, Active Form, of Cytochrome C Peroxidase From Obligate Human Pathogenic Bacterium Neisseria Gonorrhoeae To Be Published.
Page generated: Sat Dec 12 06:07:30 2020

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