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Calcium in PDB 6g1o: Structure of Pseudomonas Aeruginosa Isocitrate Lyase, Icl

Enzymatic activity of Structure of Pseudomonas Aeruginosa Isocitrate Lyase, Icl

All present enzymatic activity of Structure of Pseudomonas Aeruginosa Isocitrate Lyase, Icl:
4.1.3.1;

Protein crystallography data

The structure of Structure of Pseudomonas Aeruginosa Isocitrate Lyase, Icl, PDB code: 6g1o was solved by A.Crousilles, M.Welch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.49 / 1.88
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.943, 116.023, 128.533, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 20.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Pseudomonas Aeruginosa Isocitrate Lyase, Icl (pdb code 6g1o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Pseudomonas Aeruginosa Isocitrate Lyase, Icl, PDB code: 6g1o:

Calcium binding site 1 out of 1 in 6g1o

Go back to Calcium Binding Sites List in 6g1o
Calcium binding site 1 out of 1 in the Structure of Pseudomonas Aeruginosa Isocitrate Lyase, Icl


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Pseudomonas Aeruginosa Isocitrate Lyase, Icl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:35.2
occ:1.00
O A:HOH623 2.3 33.6 1.0
O3 A:GLV502 2.3 60.1 1.0
O A:HOH602 2.4 35.7 1.0
OD2 A:ASP184 2.4 23.1 1.0
O A:HOH601 2.5 38.3 1.0
OD1 A:ASP186 2.6 29.6 1.0
OD1 A:ASP184 2.6 22.2 1.0
C2 A:GLV502 2.8 54.9 1.0
O2 A:GLV502 2.9 56.2 1.0
CG A:ASP184 2.9 24.1 1.0
CG A:ASP186 3.7 34.2 1.0
OE1 A:GLU213 3.8 39.1 1.0
CA A:ASP186 3.9 20.0 1.0
C1 A:GLV502 4.2 57.2 1.0
NE2 A:GLN211 4.2 34.2 1.0
N A:ASP186 4.3 20.4 1.0
CB A:ASP186 4.3 24.0 1.0
NH1 A:ARG260 4.4 29.6 1.0
CB A:ASP184 4.4 21.0 1.0
CD A:GLU213 4.5 40.8 1.0
OD2 A:ASP186 4.6 30.6 1.0
O1 A:GLV502 4.6 53.6 1.0
O A:HOH774 4.6 12.0 1.0
OE2 A:GLU213 4.6 45.9 1.0
CA A:GLY102 4.7 19.6 1.0
OD1 A:ASP117 4.7 28.9 1.0
OD2 A:ASP117 4.8 28.5 1.0
N A:GLY102 4.8 19.3 1.0
O A:HOH619 5.0 25.9 1.0

Reference:

A.Crousilles, S.K.Dolan, P.Brear, D.Y.Chirgadze, M.Welch. Gluconeogenic Precursor Availability Regulates Flux Through the Glyoxylate Shunt Inpseudomonas Aeruginosa. J. Biol. Chem. V. 293 14260 2018.
ISSN: ESSN 1083-351X
PubMed: 30030382
DOI: 10.1074/JBC.RA118.004514
Page generated: Tue Jul 16 07:59:19 2024

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