Calcium in PDB 6hcs: Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Enzymatic activity of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
All present enzymatic activity of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108:
2.7.11.17;
Protein crystallography data
The structure of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108, PDB code: 6hcs
was solved by
A.Creon,
I.Josts,
H.Tidow,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.12 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
76.263,
37.214,
121.193,
90.00,
100.21,
90.00
|
R / Rfree (%)
|
26 /
29.4
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
(pdb code 6hcs). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108, PDB code: 6hcs:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 1 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:24.5
occ:1.00
|
O
|
A:THR26
|
2.2
|
23.0
|
1.0
|
OD1
|
A:ASP20
|
2.4
|
26.5
|
1.0
|
OD1
|
A:ASP24
|
2.4
|
31.9
|
1.0
|
OE2
|
A:GLU31
|
2.4
|
24.3
|
1.0
|
OD1
|
A:ASP22
|
2.5
|
40.5
|
1.0
|
OE1
|
A:GLU31
|
2.5
|
20.3
|
1.0
|
O
|
A:HOH342
|
2.6
|
35.5
|
1.0
|
CD
|
A:GLU31
|
2.8
|
19.9
|
1.0
|
CG
|
A:ASP24
|
3.3
|
38.3
|
1.0
|
CG
|
A:ASP22
|
3.3
|
30.9
|
1.0
|
C
|
A:THR26
|
3.4
|
22.3
|
1.0
|
CG
|
A:ASP20
|
3.4
|
31.4
|
1.0
|
OD2
|
A:ASP22
|
3.6
|
36.2
|
1.0
|
OD2
|
A:ASP24
|
3.8
|
41.8
|
1.0
|
N
|
A:THR26
|
4.1
|
28.1
|
1.0
|
OG1
|
A:THR26
|
4.1
|
31.5
|
1.0
|
CA
|
A:ASP20
|
4.2
|
29.9
|
1.0
|
N
|
A:ASP24
|
4.3
|
37.1
|
1.0
|
OD2
|
A:ASP20
|
4.3
|
24.3
|
1.0
|
CB
|
A:ASP20
|
4.3
|
28.6
|
1.0
|
N
|
A:ASP22
|
4.3
|
29.5
|
1.0
|
CA
|
A:THR26
|
4.3
|
31.5
|
1.0
|
CG
|
A:GLU31
|
4.4
|
19.7
|
1.0
|
N
|
A:ILE27
|
4.4
|
24.1
|
1.0
|
CB
|
A:ASP24
|
4.4
|
32.1
|
1.0
|
C
|
A:ASP20
|
4.4
|
31.4
|
1.0
|
CA
|
A:ILE27
|
4.5
|
27.1
|
1.0
|
N
|
A:LYS21
|
4.5
|
23.2
|
1.0
|
CB
|
A:ASP22
|
4.6
|
34.5
|
1.0
|
N
|
A:GLY23
|
4.6
|
33.7
|
1.0
|
CA
|
A:ASP24
|
4.8
|
32.3
|
1.0
|
CA
|
A:ASP22
|
4.8
|
32.6
|
1.0
|
N
|
A:GLY25
|
4.9
|
32.9
|
1.0
|
CB
|
A:THR26
|
4.9
|
31.3
|
1.0
|
N
|
A:THR28
|
4.9
|
22.1
|
1.0
|
C
|
A:ASP22
|
4.9
|
37.9
|
1.0
|
C
|
A:ASP24
|
4.9
|
33.4
|
1.0
|
CG2
|
A:THR28
|
5.0
|
21.9
|
1.0
|
O
|
A:ASP20
|
5.0
|
29.0
|
1.0
|
|
Calcium binding site 2 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 2 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:33.1
occ:1.00
|
OD1
|
A:ASP56
|
2.3
|
34.8
|
1.0
|
OD1
|
A:ASN60
|
2.4
|
32.9
|
1.0
|
OD1
|
A:ASP58
|
2.4
|
41.3
|
1.0
|
O
|
A:THR62
|
2.5
|
33.1
|
1.0
|
O
|
A:HOH312
|
2.5
|
40.2
|
1.0
|
OE1
|
A:GLU67
|
2.6
|
30.9
|
1.0
|
OE2
|
A:GLU67
|
2.7
|
37.8
|
1.0
|
CD
|
A:GLU67
|
3.0
|
37.0
|
1.0
|
CG
|
A:ASN60
|
3.4
|
37.7
|
1.0
|
CG
|
A:ASP58
|
3.4
|
37.5
|
1.0
|
CG
|
A:ASP56
|
3.4
|
40.5
|
1.0
|
C
|
A:THR62
|
3.6
|
36.2
|
1.0
|
OD2
|
A:ASP58
|
3.8
|
44.4
|
1.0
|
ND2
|
A:ASN60
|
3.9
|
28.8
|
1.0
|
OD2
|
A:ASP56
|
4.2
|
29.8
|
1.0
|
N
|
A:ASN60
|
4.3
|
38.9
|
1.0
|
N
|
A:THR62
|
4.3
|
35.1
|
1.0
|
CB
|
A:ASP56
|
4.3
|
36.7
|
1.0
|
CA
|
A:ASP56
|
4.4
|
35.4
|
1.0
|
N
|
A:ILE63
|
4.5
|
34.3
|
1.0
|
N
|
A:ASP58
|
4.5
|
43.4
|
1.0
|
CA
|
A:ILE63
|
4.5
|
27.1
|
1.0
|
CG
|
A:GLU67
|
4.5
|
34.9
|
1.0
|
OG1
|
A:THR62
|
4.5
|
24.6
|
1.0
|
N
|
A:ASP64
|
4.5
|
32.3
|
1.0
|
N
|
A:GLY59
|
4.6
|
41.8
|
1.0
|
CA
|
A:THR62
|
4.6
|
31.6
|
1.0
|
CB
|
A:ASN60
|
4.6
|
37.4
|
1.0
|
OD2
|
A:ASP64
|
4.6
|
40.3
|
1.0
|
CB
|
A:ASP58
|
4.6
|
35.0
|
1.0
|
C
|
A:ASP56
|
4.7
|
40.9
|
1.0
|
N
|
A:GLY61
|
4.8
|
37.1
|
1.0
|
N
|
A:ALA57
|
4.8
|
39.6
|
1.0
|
CG
|
A:ASP64
|
4.8
|
34.7
|
1.0
|
CA
|
A:ASN60
|
4.8
|
39.2
|
1.0
|
CA
|
A:ASP58
|
4.9
|
43.3
|
1.0
|
C
|
A:ILE63
|
4.9
|
24.4
|
1.0
|
C
|
A:ASP58
|
4.9
|
43.3
|
1.0
|
|
Calcium binding site 3 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 3 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca203
b:25.7
occ:1.00
|
OD1
|
A:ASP93
|
2.3
|
25.1
|
1.0
|
O
|
A:TYR99
|
2.3
|
26.0
|
1.0
|
OD1
|
A:ASP95
|
2.3
|
25.9
|
1.0
|
O
|
A:HOH313
|
2.5
|
26.5
|
1.0
|
OD1
|
A:ASN97
|
2.5
|
27.1
|
1.0
|
OE2
|
A:GLU104
|
2.5
|
25.5
|
1.0
|
OE1
|
A:GLU104
|
2.6
|
25.6
|
1.0
|
CD
|
A:GLU104
|
2.9
|
25.6
|
1.0
|
CG
|
A:ASP95
|
3.2
|
30.4
|
1.0
|
CG
|
A:ASN97
|
3.4
|
27.8
|
1.0
|
C
|
A:TYR99
|
3.5
|
28.5
|
1.0
|
OD2
|
A:ASP95
|
3.5
|
26.7
|
1.0
|
CG
|
A:ASP93
|
3.5
|
24.8
|
1.0
|
ND2
|
A:ASN97
|
4.1
|
28.5
|
1.0
|
N
|
A:TYR99
|
4.1
|
26.9
|
1.0
|
N
|
A:ASN97
|
4.2
|
26.6
|
1.0
|
CA
|
A:ASP93
|
4.3
|
24.6
|
1.0
|
CA
|
A:TYR99
|
4.3
|
26.9
|
1.0
|
OD2
|
A:ASP93
|
4.3
|
25.2
|
1.0
|
O
|
A:HOH316
|
4.3
|
28.1
|
1.0
|
CB
|
A:ASP93
|
4.4
|
26.0
|
1.0
|
N
|
A:ASP95
|
4.4
|
25.4
|
1.0
|
N
|
A:ILE100
|
4.4
|
25.7
|
1.0
|
CG
|
A:GLU104
|
4.4
|
25.6
|
1.0
|
CB
|
A:ASN97
|
4.5
|
28.1
|
1.0
|
C
|
A:ASP93
|
4.5
|
24.8
|
1.0
|
CB
|
A:ASP95
|
4.5
|
29.0
|
1.0
|
N
|
A:GLY96
|
4.5
|
25.3
|
1.0
|
CA
|
A:ILE100
|
4.5
|
25.0
|
1.0
|
O
|
A:HOH321
|
4.7
|
26.4
|
1.0
|
N
|
A:LYS94
|
4.7
|
25.0
|
1.0
|
N
|
A:SER101
|
4.7
|
25.4
|
1.0
|
CA
|
A:ASN97
|
4.8
|
27.6
|
1.0
|
N
|
A:GLY98
|
4.8
|
27.1
|
1.0
|
CA
|
A:ASP95
|
4.8
|
26.9
|
1.0
|
C
|
A:ASP95
|
4.8
|
27.5
|
1.0
|
CB
|
A:TYR99
|
4.8
|
27.8
|
1.0
|
O
|
A:ASP93
|
4.9
|
24.8
|
1.0
|
C
|
A:ASN97
|
5.0
|
27.8
|
1.0
|
|
Calcium binding site 4 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 4 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca204
b:29.1
occ:1.00
|
OD1
|
A:ASP129
|
2.4
|
29.1
|
1.0
|
OE2
|
A:GLU140
|
2.4
|
28.2
|
1.0
|
O
|
A:HOH311
|
2.4
|
29.7
|
1.0
|
O
|
A:GLN135
|
2.4
|
27.8
|
1.0
|
OD1
|
A:ASP131
|
2.4
|
30.8
|
1.0
|
OD1
|
A:ASP133
|
2.5
|
29.8
|
1.0
|
OE1
|
A:GLU140
|
2.5
|
29.4
|
1.0
|
CD
|
A:GLU140
|
2.8
|
28.8
|
1.0
|
CG
|
A:ASP131
|
3.3
|
31.4
|
1.0
|
CG
|
A:ASP133
|
3.3
|
30.5
|
1.0
|
CG
|
A:ASP129
|
3.5
|
28.7
|
1.0
|
C
|
A:GLN135
|
3.5
|
27.3
|
1.0
|
OD2
|
A:ASP131
|
3.6
|
35.6
|
1.0
|
OD2
|
A:ASP133
|
3.7
|
30.6
|
1.0
|
N
|
A:GLN135
|
4.2
|
28.2
|
1.0
|
CA
|
A:ASP129
|
4.2
|
27.9
|
1.0
|
N
|
A:ASP133
|
4.2
|
31.1
|
1.0
|
N
|
A:ASP131
|
4.3
|
30.9
|
1.0
|
OD2
|
A:ASP129
|
4.3
|
29.0
|
1.0
|
CG
|
A:GLU140
|
4.3
|
30.4
|
1.0
|
N
|
A:VAL136
|
4.3
|
26.7
|
1.0
|
CB
|
A:ASP129
|
4.3
|
28.0
|
1.0
|
N
|
A:ILE130
|
4.4
|
29.1
|
1.0
|
N
|
A:GLY132
|
4.4
|
31.0
|
1.0
|
CA
|
A:VAL136
|
4.4
|
26.5
|
1.0
|
CA
|
A:GLN135
|
4.4
|
27.6
|
1.0
|
N
|
A:ASN137
|
4.5
|
27.3
|
1.0
|
CB
|
A:ASP133
|
4.6
|
31.4
|
1.0
|
CB
|
A:ASP131
|
4.6
|
32.1
|
1.0
|
C
|
A:ASP129
|
4.7
|
28.7
|
1.0
|
N
|
A:GLY134
|
4.8
|
29.7
|
1.0
|
CA
|
A:ASP131
|
4.8
|
31.8
|
1.0
|
CA
|
A:ASP133
|
4.8
|
34.7
|
1.0
|
C
|
A:VAL136
|
5.0
|
26.6
|
1.0
|
C
|
A:ASP131
|
5.0
|
31.8
|
1.0
|
|
Calcium binding site 5 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 5 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca201
b:37.4
occ:1.00
|
OD1
|
C:ASP20
|
2.3
|
36.3
|
1.0
|
O
|
C:THR26
|
2.4
|
37.9
|
1.0
|
OD1
|
C:ASP22
|
2.4
|
49.3
|
1.0
|
OE2
|
C:GLU31
|
2.5
|
35.0
|
1.0
|
OD1
|
C:ASP24
|
2.5
|
40.2
|
1.0
|
OE1
|
C:GLU31
|
2.5
|
35.5
|
1.0
|
O
|
C:HOH320
|
2.6
|
43.7
|
1.0
|
CD
|
C:GLU31
|
2.8
|
34.8
|
1.0
|
CG
|
C:ASP22
|
3.2
|
37.7
|
1.0
|
CG
|
C:ASP24
|
3.4
|
42.1
|
1.0
|
CG
|
C:ASP20
|
3.5
|
42.3
|
1.0
|
OD2
|
C:ASP22
|
3.5
|
38.5
|
1.0
|
C
|
C:THR26
|
3.5
|
38.7
|
1.0
|
OD2
|
C:ASP24
|
3.9
|
42.1
|
1.0
|
N
|
C:THR26
|
4.1
|
40.4
|
1.0
|
OG1
|
C:THR26
|
4.1
|
41.8
|
1.0
|
N
|
C:ASP24
|
4.2
|
40.1
|
1.0
|
CA
|
C:ASP20
|
4.2
|
33.5
|
1.0
|
N
|
C:ASP22
|
4.3
|
34.3
|
1.0
|
OD2
|
C:ASP20
|
4.3
|
37.0
|
1.0
|
CB
|
C:ASP20
|
4.3
|
34.7
|
1.0
|
CG
|
C:GLU31
|
4.3
|
33.7
|
1.0
|
CA
|
C:THR26
|
4.4
|
40.4
|
1.0
|
CB
|
C:ASP22
|
4.4
|
42.6
|
1.0
|
CB
|
C:ASP24
|
4.4
|
41.6
|
1.0
|
C
|
C:ASP20
|
4.5
|
38.8
|
1.0
|
N
|
C:GLY23
|
4.5
|
41.0
|
1.0
|
N
|
C:ILE27
|
4.5
|
38.2
|
1.0
|
N
|
C:LYS21
|
4.6
|
32.4
|
1.0
|
CA
|
C:ILE27
|
4.6
|
36.8
|
1.0
|
CA
|
C:ASP22
|
4.7
|
35.5
|
1.0
|
CA
|
C:ASP24
|
4.7
|
41.0
|
1.0
|
C
|
C:ASP22
|
4.8
|
43.8
|
1.0
|
O
|
C:HOH346
|
4.9
|
44.7
|
1.0
|
N
|
C:GLY25
|
4.9
|
40.9
|
1.0
|
CB
|
C:THR26
|
4.9
|
42.0
|
1.0
|
CG2
|
C:THR28
|
4.9
|
39.1
|
1.0
|
C
|
C:ASP24
|
5.0
|
41.6
|
1.0
|
N
|
C:THR28
|
5.0
|
36.9
|
1.0
|
O
|
C:ASP20
|
5.0
|
33.3
|
1.0
|
|
Calcium binding site 6 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 6 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:47.2
occ:1.00
|
OD1
|
C:ASP56
|
2.3
|
47.0
|
1.0
|
OD1
|
C:ASP58
|
2.4
|
50.7
|
1.0
|
O
|
C:THR62
|
2.4
|
44.1
|
1.0
|
OD1
|
C:ASN60
|
2.4
|
48.5
|
1.0
|
O
|
C:HOH307
|
2.5
|
49.0
|
1.0
|
OE1
|
C:GLU67
|
2.6
|
45.0
|
1.0
|
OE2
|
C:GLU67
|
2.7
|
47.8
|
1.0
|
O
|
C:HOH347
|
2.9
|
52.3
|
1.0
|
CD
|
C:GLU67
|
3.0
|
46.2
|
1.0
|
CG
|
C:ASN60
|
3.3
|
50.1
|
1.0
|
CG
|
C:ASP58
|
3.4
|
53.8
|
1.0
|
CG
|
C:ASP56
|
3.5
|
52.3
|
1.0
|
C
|
C:THR62
|
3.6
|
46.2
|
1.0
|
OD2
|
C:ASP58
|
3.8
|
53.5
|
1.0
|
ND2
|
C:ASN60
|
3.8
|
50.5
|
1.0
|
OD2
|
C:ASP56
|
4.2
|
46.9
|
1.0
|
N
|
C:THR62
|
4.3
|
44.3
|
1.0
|
N
|
C:ASN60
|
4.3
|
51.2
|
1.0
|
O
|
C:HOH327
|
4.4
|
78.8
|
1.0
|
OD2
|
C:ASP64
|
4.5
|
47.6
|
1.0
|
N
|
C:ILE63
|
4.5
|
41.2
|
1.0
|
CA
|
C:ILE63
|
4.5
|
41.0
|
1.0
|
CA
|
C:ASP56
|
4.5
|
44.9
|
1.0
|
N
|
C:ASP58
|
4.5
|
51.3
|
1.0
|
CB
|
C:ASP56
|
4.5
|
44.9
|
1.0
|
N
|
C:ASP64
|
4.5
|
42.4
|
1.0
|
CA
|
C:THR62
|
4.5
|
42.8
|
1.0
|
N
|
C:GLY59
|
4.5
|
56.2
|
1.0
|
CB
|
C:ASN60
|
4.5
|
51.9
|
1.0
|
CG
|
C:GLU67
|
4.6
|
45.8
|
1.0
|
OG1
|
C:THR62
|
4.6
|
44.6
|
1.0
|
CB
|
C:ASP58
|
4.7
|
53.8
|
1.0
|
N
|
C:GLY61
|
4.8
|
47.8
|
1.0
|
C
|
C:ASP56
|
4.8
|
48.0
|
1.0
|
CG
|
C:ASP64
|
4.8
|
45.9
|
1.0
|
CA
|
C:ASN60
|
4.8
|
51.2
|
1.0
|
C
|
C:ASP58
|
4.9
|
53.3
|
1.0
|
CA
|
C:ASP58
|
4.9
|
53.3
|
1.0
|
C
|
C:ILE63
|
4.9
|
41.1
|
1.0
|
N
|
C:ALA57
|
4.9
|
52.1
|
1.0
|
C
|
C:ASN60
|
5.0
|
49.2
|
1.0
|
|
Calcium binding site 7 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 7 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca203
b:17.8
occ:1.00
|
OD1
|
C:ASP93
|
2.2
|
29.4
|
1.0
|
O
|
C:TYR99
|
2.3
|
20.8
|
1.0
|
OD1
|
C:ASP95
|
2.4
|
16.4
|
1.0
|
O
|
C:HOH312
|
2.4
|
20.4
|
1.0
|
OE1
|
C:GLU104
|
2.5
|
27.7
|
1.0
|
OD1
|
C:ASN97
|
2.5
|
17.7
|
1.0
|
OE2
|
C:GLU104
|
2.6
|
21.7
|
1.0
|
CD
|
C:GLU104
|
2.9
|
24.8
|
1.0
|
CG
|
C:ASP95
|
3.2
|
27.4
|
1.0
|
CG
|
C:ASP93
|
3.5
|
15.9
|
1.0
|
C
|
C:TYR99
|
3.5
|
26.7
|
1.0
|
CG
|
C:ASN97
|
3.5
|
23.8
|
1.0
|
OD2
|
C:ASP95
|
3.5
|
25.4
|
1.0
|
N
|
C:TYR99
|
4.1
|
20.3
|
1.0
|
ND2
|
C:ASN97
|
4.1
|
15.1
|
1.0
|
N
|
C:ASN97
|
4.3
|
29.4
|
1.0
|
OD2
|
C:ASP93
|
4.3
|
16.4
|
1.0
|
CA
|
C:TYR99
|
4.3
|
26.7
|
1.0
|
CA
|
C:ASP93
|
4.3
|
19.9
|
1.0
|
N
|
C:ASP95
|
4.4
|
29.6
|
1.0
|
CB
|
C:ASP93
|
4.4
|
23.9
|
1.0
|
O
|
C:HOH319
|
4.4
|
19.6
|
1.0
|
CG
|
C:GLU104
|
4.4
|
17.4
|
1.0
|
N
|
C:ILE100
|
4.4
|
26.2
|
1.0
|
CB
|
C:ASP95
|
4.5
|
34.2
|
1.0
|
CA
|
C:ILE100
|
4.5
|
16.6
|
1.0
|
O
|
C:HOH323
|
4.5
|
25.5
|
1.0
|
C
|
C:ASP93
|
4.5
|
25.2
|
1.0
|
CB
|
C:ASN97
|
4.5
|
24.4
|
1.0
|
N
|
C:GLY96
|
4.6
|
17.9
|
1.0
|
N
|
C:LYS94
|
4.7
|
25.3
|
1.0
|
CB
|
C:TYR99
|
4.7
|
15.6
|
1.0
|
N
|
C:SER101
|
4.7
|
21.0
|
1.0
|
CA
|
C:ASP95
|
4.8
|
30.9
|
1.0
|
N
|
C:GLY98
|
4.8
|
25.6
|
1.0
|
CA
|
C:ASN97
|
4.8
|
15.0
|
1.0
|
C
|
C:ASP95
|
4.8
|
29.7
|
1.0
|
O
|
C:HOH353
|
5.0
|
34.0
|
1.0
|
O
|
C:ASP93
|
5.0
|
30.3
|
1.0
|
|
Calcium binding site 8 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 8 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca204
b:16.9
occ:1.00
|
OD1
|
C:ASP133
|
2.4
|
23.9
|
1.0
|
OD1
|
C:ASP129
|
2.4
|
19.1
|
1.0
|
OE1
|
C:GLU140
|
2.4
|
18.6
|
1.0
|
OD1
|
C:ASP131
|
2.4
|
20.9
|
1.0
|
O
|
C:GLN135
|
2.4
|
19.9
|
1.0
|
OE2
|
C:GLU140
|
2.5
|
17.4
|
1.0
|
O
|
C:HOH306
|
2.5
|
21.3
|
1.0
|
CD
|
C:GLU140
|
2.8
|
23.8
|
1.0
|
CG
|
C:ASP133
|
3.3
|
32.3
|
1.0
|
CG
|
C:ASP131
|
3.3
|
33.6
|
1.0
|
CG
|
C:ASP129
|
3.5
|
21.4
|
1.0
|
C
|
C:GLN135
|
3.5
|
17.1
|
1.0
|
OD2
|
C:ASP131
|
3.5
|
29.6
|
1.0
|
OD2
|
C:ASP133
|
3.6
|
24.1
|
1.0
|
CA
|
C:ASP129
|
4.2
|
25.2
|
1.0
|
N
|
C:GLN135
|
4.2
|
16.5
|
1.0
|
N
|
C:ASP133
|
4.2
|
24.2
|
1.0
|
N
|
C:ASP131
|
4.2
|
23.2
|
1.0
|
CB
|
C:ASP129
|
4.3
|
17.9
|
1.0
|
CG
|
C:GLU140
|
4.3
|
18.2
|
1.0
|
N
|
C:ILE130
|
4.3
|
18.4
|
1.0
|
OD2
|
C:ASP129
|
4.3
|
17.3
|
1.0
|
N
|
C:GLY132
|
4.4
|
17.3
|
1.0
|
N
|
C:VAL136
|
4.4
|
18.7
|
1.0
|
CA
|
C:GLN135
|
4.4
|
26.2
|
1.0
|
CA
|
C:VAL136
|
4.4
|
17.1
|
1.0
|
CB
|
C:ASP133
|
4.5
|
27.5
|
1.0
|
N
|
C:ASN137
|
4.6
|
20.4
|
1.0
|
CB
|
C:ASP131
|
4.6
|
22.9
|
1.0
|
C
|
C:ASP129
|
4.7
|
26.9
|
1.0
|
N
|
C:GLY134
|
4.8
|
23.3
|
1.0
|
CA
|
C:ASP133
|
4.8
|
21.8
|
1.0
|
CA
|
C:ASP131
|
4.8
|
21.1
|
1.0
|
C
|
C:ASP131
|
5.0
|
20.3
|
1.0
|
C
|
C:VAL136
|
5.0
|
26.4
|
1.0
|
|
Calcium binding site 9 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 9 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca201
b:74.3
occ:1.00
|
OD1
|
E:ASP129
|
2.4
|
70.3
|
1.0
|
OD1
|
E:ASP131
|
2.5
|
75.0
|
1.0
|
OE2
|
E:GLU140
|
2.5
|
73.1
|
1.0
|
O
|
E:GLN135
|
2.7
|
76.8
|
1.0
|
OD1
|
E:ASP133
|
2.7
|
76.7
|
1.0
|
OE1
|
E:GLU140
|
2.8
|
72.8
|
1.0
|
CD
|
E:GLU140
|
3.0
|
72.5
|
1.0
|
CG
|
E:ASP133
|
3.1
|
78.1
|
1.0
|
CG
|
E:ASP131
|
3.2
|
76.0
|
1.0
|
OD2
|
E:ASP133
|
3.2
|
79.8
|
1.0
|
OD2
|
E:ASP131
|
3.5
|
78.0
|
1.0
|
CG
|
E:ASP129
|
3.5
|
68.7
|
1.0
|
C
|
E:GLN135
|
3.7
|
79.3
|
1.0
|
N
|
E:ASP133
|
4.0
|
73.3
|
1.0
|
OD2
|
E:ASP129
|
4.2
|
68.9
|
1.0
|
CA
|
E:ASP129
|
4.3
|
68.9
|
1.0
|
N
|
E:ASN137
|
4.3
|
77.0
|
1.0
|
CB
|
E:ASP133
|
4.3
|
78.0
|
1.0
|
N
|
E:ASP131
|
4.3
|
70.5
|
1.0
|
N
|
E:GLY132
|
4.3
|
71.1
|
1.0
|
CB
|
E:ASP129
|
4.4
|
66.5
|
1.0
|
N
|
E:GLN135
|
4.4
|
73.7
|
1.0
|
CA
|
E:VAL136
|
4.4
|
74.4
|
1.0
|
N
|
E:VAL136
|
4.4
|
74.4
|
1.0
|
CB
|
E:ASP131
|
4.5
|
74.8
|
1.0
|
CG
|
E:GLU140
|
4.5
|
71.7
|
1.0
|
CA
|
E:ASP133
|
4.6
|
75.3
|
1.0
|
OD1
|
E:ASN137
|
4.6
|
77.6
|
1.0
|
N
|
E:ILE130
|
4.6
|
67.0
|
1.0
|
C
|
E:ASP129
|
4.6
|
66.0
|
1.0
|
CA
|
E:GLN135
|
4.7
|
74.5
|
1.0
|
CA
|
E:ASP131
|
4.7
|
72.0
|
1.0
|
C
|
E:ASP131
|
4.8
|
71.6
|
1.0
|
CG
|
E:ASN137
|
4.8
|
81.7
|
1.0
|
CB
|
E:ASN137
|
4.8
|
81.0
|
1.0
|
C
|
E:VAL136
|
4.8
|
76.3
|
1.0
|
N
|
E:GLY134
|
4.9
|
72.4
|
1.0
|
C
|
E:ASP133
|
4.9
|
74.7
|
1.0
|
C
|
E:GLY132
|
5.0
|
73.8
|
1.0
|
|
Calcium binding site 10 out
of 16 in 6hcs
Go back to
Calcium Binding Sites List in 6hcs
Calcium binding site 10 out
of 16 in the Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Cam-Peptide Complex Containing Azf at Position 108 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca202
b:87.7
occ:1.00
|
O
|
E:TYR99
|
2.4
|
84.0
|
1.0
|
OE1
|
E:GLU104
|
2.4
|
87.5
|
1.0
|
OD2
|
E:ASP93
|
2.5
|
89.6
|
1.0
|
OE2
|
E:GLU104
|
2.5
|
84.5
|
1.0
|
OD1
|
E:ASN97
|
2.5
|
90.6
|
1.0
|
CD
|
E:GLU104
|
2.8
|
84.6
|
1.0
|
OD1
|
E:ASP95
|
2.9
|
94.1
|
1.0
|
OD2
|
E:ASP95
|
3.2
|
92.0
|
1.0
|
CG
|
E:ASP95
|
3.3
|
93.8
|
1.0
|
CG
|
E:ASN97
|
3.5
|
93.3
|
1.0
|
C
|
E:TYR99
|
3.5
|
83.7
|
1.0
|
CG
|
E:ASP93
|
3.5
|
89.2
|
1.0
|
ND2
|
E:ASN97
|
4.1
|
91.9
|
1.0
|
N
|
E:ASN97
|
4.1
|
95.8
|
1.0
|
N
|
E:TYR99
|
4.1
|
86.8
|
1.0
|
CA
|
E:ASP93
|
4.2
|
85.6
|
1.0
|
CG
|
E:GLU104
|
4.3
|
83.2
|
1.0
|
CB
|
E:ASP93
|
4.3
|
87.3
|
1.0
|
N
|
E:GLY96
|
4.3
|
95.7
|
1.0
|
OD1
|
E:ASP93
|
4.4
|
90.9
|
1.0
|
CA
|
E:TYR99
|
4.4
|
84.0
|
1.0
|
N
|
E:ILE100
|
4.5
|
80.1
|
1.0
|
O
|
E:HOH309
|
4.5
|
85.5
|
1.0
|
N
|
E:ASP95
|
4.5
|
93.3
|
1.0
|
CA
|
E:ILE100
|
4.6
|
78.5
|
1.0
|
CB
|
E:ASN97
|
4.6
|
95.8
|
1.0
|
N
|
E:SER101
|
4.6
|
78.3
|
1.0
|
C
|
E:ASP93
|
4.6
|
88.2
|
1.0
|
N
|
E:LYS94
|
4.7
|
88.0
|
1.0
|
CB
|
E:ASP95
|
4.7
|
96.0
|
1.0
|
OE1
|
E:GLN135
|
4.7
|
82.3
|
1.0
|
CA
|
E:ASN97
|
4.8
|
96.3
|
1.0
|
N
|
E:GLY98
|
4.8
|
92.6
|
1.0
|
CB
|
E:TYR99
|
4.9
|
84.3
|
1.0
|
CA
|
E:ASP95
|
5.0
|
96.3
|
1.0
|
|
Reference:
A.Creon,
I.Josts,
S.Niebling,
N.Huse,
H.Tidow.
Conformation-Specific Detection of Calmodulin Binding Using the Unnatural Amino Acid P-Azido-Phenylalanine (Azf) As An Ir-Sensor. Struct Dyn V. 5 64701 2018.
ISSN: ESSN 2329-7778
PubMed: 30474048
DOI: 10.1063/1.5053466
Page generated: Tue Jul 16 08:19:53 2024
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