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Calcium in PDB 6hhm: Crystal Structure of the Family S1_7 Ulvan-Specific Sulfatase FA22070 From Formosa Agariphila

Enzymatic activity of Crystal Structure of the Family S1_7 Ulvan-Specific Sulfatase FA22070 From Formosa Agariphila

All present enzymatic activity of Crystal Structure of the Family S1_7 Ulvan-Specific Sulfatase FA22070 From Formosa Agariphila:
3.1.6.1;

Protein crystallography data

The structure of Crystal Structure of the Family S1_7 Ulvan-Specific Sulfatase FA22070 From Formosa Agariphila, PDB code: 6hhm was solved by T.Roret, A.Prechoux, G.Michel, M.Czjzek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.24 / 1.23
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.733, 66.153, 141.798, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 15.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Family S1_7 Ulvan-Specific Sulfatase FA22070 From Formosa Agariphila (pdb code 6hhm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Family S1_7 Ulvan-Specific Sulfatase FA22070 From Formosa Agariphila, PDB code: 6hhm:

Calcium binding site 1 out of 1 in 6hhm

Go back to Calcium Binding Sites List in 6hhm
Calcium binding site 1 out of 1 in the Crystal Structure of the Family S1_7 Ulvan-Specific Sulfatase FA22070 From Formosa Agariphila


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Family S1_7 Ulvan-Specific Sulfatase FA22070 From Formosa Agariphila within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca500

b:8.5
occ:1.00
 OD1 A:ASP36 2.0 12.3 1.0
OD2 A:ASP312 2.1 11.3 1.0
OD1 A:ASP35 2.2 11.0 1.0
NE2 A:HIS313 2.2 10.7 1.0
SG A:CYS74 2.5 15.6 1.0
CG A:ASP312 2.8 11.0 1.0
OD1 A:ASP312 2.8 11.3 1.0
CE1 A:HIS313 3.1 11.1 1.0
CD2 A:HIS313 3.2 11.1 1.0
CG A:ASP35 3.2 11.6 1.0
CG A:ASP36 3.2 11.7 1.0
H A:ASP36 3.3 13.0 1.0
HE1 A:HIS313 3.3 13.3 1.0
HD2 A:HIS313 3.4 13.3 1.0
HB3 A:CYS74 3.4 18.5 1.0
HD2 A:HIS213 3.4 13.7 1.0
HA A:CYS74 3.4 16.6 1.0
CB A:CYS74 3.4 15.4 1.0
HH21 A:ARG78 3.5 14.9 1.0
HE A:ARG78 3.6 14.5 1.0
N A:ASP36 3.7 10.8 1.0
HE3 A:LYS325 3.7 14.4 1.0
OD2 A:ASP35 3.8 12.5 1.0
HA A:ASP35 3.8 13.3 1.0
HA A:ASP36 3.8 12.7 1.0
CA A:CYS74 3.9 13.8 1.0
HZ3 A:LYS125 3.9 16.7 1.0
HZ1 A:LYS125 4.0 16.7 1.0
OD2 A:ASP36 4.0 11.8 1.0
CA A:ASP36 4.1 10.6 1.0
ND1 A:HIS313 4.2 11.1 1.0
CB A:ASP36 4.3 11.3 1.0
CG A:HIS313 4.3 11.5 1.0
CB A:ASP312 4.3 11.0 1.0
HZ2 A:LYS325 4.3 14.6 1.0
N A:CYS74 4.3 12.9 1.0
CB A:ASP35 4.3 11.7 1.0
HB2 A:CYS74 4.3 18.5 1.0
CD2 A:HIS213 4.3 11.4 1.0
CA A:ASP35 4.3 11.1 1.0
H A:CYS74 4.3 15.5 1.0
C A:ASP35 4.3 11.4 1.0
NZ A:LYS125 4.4 13.9 1.0
NH2 A:ARG78 4.4 12.4 1.0
HE2 A:LYS125 4.4 16.0 1.0
NE A:ARG78 4.4 12.1 1.0
HB2 A:ASP312 4.5 13.2 1.0
CE A:LYS325 4.5 12.0 1.0
HB3 A:ASP312 4.7 13.2 1.0
HZ1 A:LYS325 4.7 14.6 1.0
HB2 A:ASP36 4.7 13.6 1.0
NZ A:LYS325 4.7 12.2 1.0
HB2 A:HIS213 4.8 15.0 1.0
HB3 A:ASP35 4.9 14.1 1.0
HD2 A:LYS325 4.9 13.8 1.0
HB2 A:ASP35 4.9 14.1 1.0
CE A:LYS125 4.9 13.3 1.0
CZ A:ARG78 4.9 11.5 1.0
HD1 A:HIS313 5.0 13.3 1.0
HB3 A:ASP36 5.0 13.6 1.0
HH22 A:ARG78 5.0 14.9 1.0

Reference:

L.Reisky, A.Prechoux, M.K.Zuhlke, M.Baumgen, C.S.Robb, N.Gerlach, T.Roret, C.Stanetty, R.Larocque, G.Michel, T.Song, S.Markert, F.Unfried, M.D.Mihovilovic, A.Trautwein-Schult, D.Becher, T.Schweder, U.T.Bornscheuer, J.H.Hehemann. A Marine Bacterial Enzymatic Cascade Degrades the Algal Polysaccharide Ulvan. Nat.Chem.Biol. V. 15 803 2019.
ISSN: ESSN 1552-4469
PubMed: 31285597
DOI: 10.1038/S41589-019-0311-9
Page generated: Tue Jul 16 08:22:50 2024

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