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Calcium in PDB 6hmf: D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant
Enzymatic activity of D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant
All present enzymatic activity of D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant:
2.7.7.7; 3.1.11.1;
2.7.7.7; 3.1.11.1;
Protein crystallography data
The structure of D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant, PDB code: 6hmf
was solved by
P.Raia,
M.Delarue,
L.Sauguet,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.19 / 2.60 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 85.750, 91.240, 143.990, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 22.7 / 25.5 |
Other elements in 6hmf:
The structure of D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant also contains other interesting chemical elements:
| Zinc | (Zn) | 2 atoms |
| Arsenic | (As) | 2 atoms |
| Iron | (Fe) | 2 atoms |
Calcium Binding Sites:
The binding sites of Calcium atom in the D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant
(pdb code 6hmf). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant, PDB code: 6hmf:
In total only one binding site of Calcium was determined in the D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant, PDB code: 6hmf:
Calcium binding site 1 out of 1 in 6hmf
Go back to
Calcium Binding Sites List in 6hmf
Calcium binding site 1 out
of 1 in the D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of D-Family Dna Polymerase - DP1 Subunit (3'-5' Proof-Reading Exonuclease) H451 Proof-Reading Deficient Variant within 5.0Å range:
|
Reference:
P.Raia,
M.Carroni,
E.Henry,
G.Pehau-Arnaudet,
S.Brule,
P.Beguin,
G.Henneke,
E.Lindahl,
M.Delarue,
L.Sauguet.
Structure of the DP1-DP2 Pold Complex Bound with Dna and Its Implications For the Evolutionary History of Dna and Rna Polymerases. Plos Biol. V. 17 00122 2019.
ISSN: ESSN 1545-7885
PubMed: 30657780
DOI: 10.1371/JOURNAL.PBIO.3000122
Page generated: Tue Jul 16 08:28:17 2024
ISSN: ESSN 1545-7885
PubMed: 30657780
DOI: 10.1371/JOURNAL.PBIO.3000122
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