Calcium in PDB 6hr1: Crystal Structure of the Yfpnano Fusion Protein
Enzymatic activity of Crystal Structure of the Yfpnano Fusion Protein
All present enzymatic activity of Crystal Structure of the Yfpnano Fusion Protein:
2.7.11.18;
Protein crystallography data
The structure of Crystal Structure of the Yfpnano Fusion Protein, PDB code: 6hr1
was solved by
R.M.Benoit,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.59 /
1.90
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.700,
117.800,
84.500,
90.00,
99.90,
90.00
|
|
R / Rfree (%)
|
18.1 /
21.4
|
Other elements in 6hr1:
The structure of Crystal Structure of the Yfpnano Fusion Protein also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of the Yfpnano Fusion Protein
(pdb code 6hr1). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Crystal Structure of the Yfpnano Fusion Protein, PDB code: 6hr1:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 6hr1
Go back to
Calcium Binding Sites List in 6hr1
Calcium binding site 1 out
of 8 in the Crystal Structure of the Yfpnano Fusion Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca902
b:43.2
occ:1.00
|
O
|
A:THR278
|
2.2
|
40.6
|
1.0
|
|
O
|
A:HOH1007
|
2.3
|
45.2
|
1.0
|
|
OD1
|
A:ASP272
|
2.3
|
46.2
|
1.0
|
|
OE1
|
A:GLU283
|
2.4
|
47.4
|
1.0
|
|
OE2
|
A:GLU283
|
2.5
|
36.2
|
1.0
|
|
OD1
|
A:ASP274
|
2.6
|
48.2
|
1.0
|
|
CD
|
A:GLU283
|
2.8
|
40.4
|
1.0
|
|
OD1
|
A:ASP276
|
2.8
|
54.2
|
1.0
|
|
OD2
|
A:ASP276
|
3.0
|
56.5
|
1.0
|
|
CG
|
A:ASP276
|
3.1
|
58.5
|
1.0
|
|
CG
|
A:ASP274
|
3.3
|
46.0
|
1.0
|
|
C
|
A:THR278
|
3.4
|
46.6
|
1.0
|
|
CG
|
A:ASP272
|
3.5
|
42.4
|
1.0
|
|
OD2
|
A:ASP274
|
3.5
|
50.8
|
1.0
|
|
OG1
|
A:THR278
|
4.0
|
57.2
|
1.0
|
|
CA
|
A:ASP272
|
4.1
|
32.6
|
1.0
|
|
N
|
A:THR278
|
4.2
|
44.5
|
1.0
|
|
CG
|
A:GLU283
|
4.2
|
40.6
|
1.0
|
|
CB
|
A:ASP272
|
4.3
|
40.7
|
1.0
|
|
CA
|
A:THR278
|
4.3
|
55.6
|
1.0
|
|
N
|
A:ILE279
|
4.3
|
43.1
|
1.0
|
|
CB
|
A:ASP276
|
4.3
|
49.8
|
1.0
|
|
OD2
|
A:ASP272
|
4.4
|
46.7
|
1.0
|
|
N
|
A:ASP276
|
4.4
|
50.1
|
1.0
|
|
N
|
A:ASP274
|
4.4
|
45.8
|
1.0
|
|
CA
|
A:ILE279
|
4.5
|
40.0
|
1.0
|
|
C
|
A:ASP272
|
4.5
|
44.6
|
1.0
|
|
N
|
A:LYS273
|
4.6
|
44.2
|
1.0
|
|
CB
|
A:ASP274
|
4.6
|
49.7
|
1.0
|
|
CG2
|
A:THR280
|
4.7
|
46.8
|
1.0
|
|
N
|
A:THR280
|
4.7
|
40.9
|
1.0
|
|
CA
|
A:ASP276
|
4.8
|
52.9
|
1.0
|
|
CB
|
A:THR278
|
4.8
|
49.6
|
1.0
|
|
O
|
A:HOH1108
|
4.8
|
46.3
|
1.0
|
|
N
|
A:GLY275
|
4.8
|
47.8
|
1.0
|
|
N
|
A:GLY277
|
4.9
|
47.6
|
1.0
|
|
CA
|
A:ASP274
|
4.9
|
52.5
|
1.0
|
|
C
|
A:ASP276
|
5.0
|
53.0
|
1.0
|
|
Calcium binding site 2 out
of 8 in 6hr1
Go back to
Calcium Binding Sites List in 6hr1
Calcium binding site 2 out
of 8 in the Crystal Structure of the Yfpnano Fusion Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca903
b:54.2
occ:1.00
|
OE2
|
A:GLU319
|
2.2
|
56.4
|
1.0
|
|
OD1
|
A:ASN312
|
2.3
|
59.4
|
1.0
|
|
OD1
|
A:ASP308
|
2.3
|
58.1
|
1.0
|
|
O
|
A:HOH1003
|
2.4
|
58.6
|
1.0
|
|
O
|
A:THR314
|
2.5
|
49.0
|
1.0
|
|
OD1
|
A:ASP310
|
2.6
|
65.2
|
1.0
|
|
OE1
|
A:GLU319
|
2.7
|
64.0
|
1.0
|
|
CD
|
A:GLU319
|
2.8
|
62.4
|
1.0
|
|
CG
|
A:ASN312
|
3.0
|
64.1
|
1.0
|
|
ND2
|
A:ASN312
|
3.3
|
69.3
|
1.0
|
|
CG
|
A:ASP310
|
3.4
|
62.7
|
1.0
|
|
CG
|
A:ASP308
|
3.4
|
52.3
|
1.0
|
|
C
|
A:THR314
|
3.7
|
51.6
|
1.0
|
|
OD2
|
A:ASP310
|
3.8
|
71.6
|
1.0
|
|
N
|
A:ASN312
|
4.0
|
51.7
|
1.0
|
|
OD2
|
A:ASP308
|
4.1
|
54.5
|
1.0
|
|
OD2
|
A:ASP316
|
4.2
|
71.4
|
1.0
|
|
CG
|
A:GLU319
|
4.3
|
50.2
|
1.0
|
|
CB
|
A:ASN312
|
4.3
|
63.5
|
1.0
|
|
N
|
A:GLY311
|
4.3
|
57.5
|
1.0
|
|
CA
|
A:ASP308
|
4.4
|
46.2
|
1.0
|
|
CB
|
A:ASP308
|
4.4
|
48.5
|
1.0
|
|
N
|
A:THR314
|
4.4
|
48.0
|
1.0
|
|
CA
|
A:ILE315
|
4.5
|
50.4
|
1.0
|
|
N
|
A:ILE315
|
4.5
|
45.0
|
1.0
|
|
CB
|
A:ASP310
|
4.5
|
52.2
|
1.0
|
|
N
|
A:ASP310
|
4.5
|
51.3
|
1.0
|
|
OG1
|
A:THR314
|
4.6
|
52.8
|
1.0
|
|
CA
|
A:ASN312
|
4.6
|
55.7
|
1.0
|
|
N
|
A:ASP316
|
4.6
|
52.6
|
1.0
|
|
CA
|
A:THR314
|
4.7
|
48.7
|
1.0
|
|
C
|
A:ASP308
|
4.7
|
55.2
|
1.0
|
|
N
|
A:GLY313
|
4.7
|
54.4
|
1.0
|
|
CG
|
A:ASP316
|
4.7
|
64.9
|
1.0
|
|
CA
|
A:ASP310
|
4.8
|
53.0
|
1.0
|
|
C
|
A:ASP310
|
4.9
|
59.9
|
1.0
|
|
C
|
A:ASN312
|
4.9
|
62.8
|
1.0
|
|
N
|
A:ALA309
|
4.9
|
58.0
|
1.0
|
|
C
|
A:ILE315
|
5.0
|
46.9
|
1.0
|
|
Calcium binding site 3 out
of 8 in 6hr1
Go back to
Calcium Binding Sites List in 6hr1
Calcium binding site 3 out
of 8 in the Crystal Structure of the Yfpnano Fusion Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca904
b:23.9
occ:1.00
|
OD1
|
A:ASP381
|
2.2
|
26.4
|
1.0
|
|
OE1
|
A:GLU392
|
2.3
|
23.6
|
1.0
|
|
O
|
A:HOH1030
|
2.3
|
27.9
|
1.0
|
|
OD1
|
A:ASP385
|
2.4
|
30.6
|
1.0
|
|
OD1
|
A:ASP383
|
2.4
|
27.9
|
1.0
|
|
O
|
A:GLN387
|
2.4
|
25.7
|
1.0
|
|
OE2
|
A:GLU392
|
2.5
|
28.8
|
1.0
|
|
CD
|
A:GLU392
|
2.8
|
28.3
|
1.0
|
|
CG
|
A:ASP383
|
3.2
|
36.4
|
1.0
|
|
CG
|
A:ASP385
|
3.3
|
29.1
|
1.0
|
|
CG
|
A:ASP381
|
3.3
|
29.9
|
1.0
|
|
OD2
|
A:ASP383
|
3.5
|
33.5
|
1.0
|
|
C
|
A:GLN387
|
3.5
|
29.4
|
1.0
|
|
OD2
|
A:ASP385
|
3.6
|
34.4
|
1.0
|
|
OD2
|
A:ASP381
|
4.2
|
28.9
|
1.0
|
|
CB
|
A:ASP381
|
4.2
|
28.9
|
1.0
|
|
CA
|
A:ASP381
|
4.2
|
29.5
|
1.0
|
|
N
|
A:GLN387
|
4.2
|
24.5
|
1.0
|
|
N
|
A:ASP385
|
4.2
|
30.5
|
1.0
|
|
N
|
A:ASP383
|
4.2
|
27.3
|
1.0
|
|
CG
|
A:GLU392
|
4.3
|
22.6
|
1.0
|
|
N
|
A:ASN389
|
4.3
|
26.0
|
1.0
|
|
N
|
A:VAL388
|
4.3
|
22.5
|
1.0
|
|
CA
|
A:VAL388
|
4.3
|
22.7
|
1.0
|
|
N
|
A:ILE382
|
4.4
|
25.4
|
1.0
|
|
N
|
A:GLY384
|
4.4
|
30.7
|
1.0
|
|
CA
|
A:GLN387
|
4.4
|
20.1
|
1.0
|
|
CB
|
A:ASP385
|
4.5
|
29.9
|
1.0
|
|
CB
|
A:ASP383
|
4.5
|
27.5
|
1.0
|
|
C
|
A:ASP381
|
4.7
|
33.0
|
1.0
|
|
CA
|
A:ASP383
|
4.7
|
29.0
|
1.0
|
|
N
|
A:GLY386
|
4.8
|
33.8
|
1.0
|
|
C
|
A:ASP383
|
4.8
|
32.3
|
1.0
|
|
CA
|
A:ASP385
|
4.8
|
31.6
|
1.0
|
|
C
|
A:VAL388
|
4.8
|
27.4
|
1.0
|
|
Calcium binding site 4 out
of 8 in 6hr1
Go back to
Calcium Binding Sites List in 6hr1
Calcium binding site 4 out
of 8 in the Crystal Structure of the Yfpnano Fusion Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca905
b:23.9
occ:1.00
|
O
|
A:HOH1102
|
1.9
|
25.3
|
1.0
|
|
OD1
|
A:ASP345
|
2.1
|
27.9
|
1.0
|
|
O
|
A:TYR351
|
2.3
|
24.9
|
1.0
|
|
OD1
|
A:ASN349
|
2.4
|
25.3
|
1.0
|
|
OD1
|
A:ASP347
|
2.4
|
35.8
|
1.0
|
|
OE1
|
A:GLU356
|
2.5
|
25.1
|
1.0
|
|
OE2
|
A:GLU356
|
2.5
|
27.6
|
1.0
|
|
CD
|
A:GLU356
|
2.8
|
32.1
|
1.0
|
|
CG
|
A:ASP345
|
3.3
|
30.4
|
1.0
|
|
CG
|
A:ASN349
|
3.4
|
33.5
|
1.0
|
|
CG
|
A:ASP347
|
3.4
|
39.6
|
1.0
|
|
C
|
A:TYR351
|
3.5
|
26.7
|
1.0
|
|
OD2
|
A:ASP347
|
3.8
|
38.3
|
1.0
|
|
ND2
|
A:ASN349
|
4.0
|
29.0
|
1.0
|
|
OD2
|
A:ASP345
|
4.1
|
31.6
|
1.0
|
|
N
|
A:TYR351
|
4.2
|
25.8
|
1.0
|
|
N
|
A:ASN349
|
4.2
|
29.3
|
1.0
|
|
CA
|
A:ASP345
|
4.2
|
28.3
|
1.0
|
|
CB
|
A:ASP345
|
4.3
|
31.4
|
1.0
|
|
CA
|
A:TYR351
|
4.3
|
24.0
|
1.0
|
|
C
|
A:ASP345
|
4.4
|
30.3
|
1.0
|
|
CG
|
A:GLU356
|
4.4
|
22.2
|
1.0
|
|
N
|
A:ASP347
|
4.4
|
31.1
|
1.0
|
|
CB
|
A:ASN349
|
4.4
|
28.5
|
1.0
|
|
N
|
A:ILE352
|
4.4
|
25.6
|
1.0
|
|
CA
|
A:ILE352
|
4.5
|
22.5
|
1.0
|
|
N
|
A:GLY348
|
4.6
|
33.0
|
1.0
|
|
N
|
A:LYS346
|
4.6
|
32.4
|
1.0
|
|
CB
|
A:ASP347
|
4.6
|
31.9
|
1.0
|
|
N
|
A:SER353
|
4.6
|
25.5
|
1.0
|
|
CB
|
A:TYR351
|
4.7
|
25.0
|
1.0
|
|
O
|
A:ASP345
|
4.7
|
27.8
|
1.0
|
|
CA
|
A:ASN349
|
4.7
|
34.0
|
1.0
|
|
O
|
A:HOH1045
|
4.8
|
29.1
|
1.0
|
|
CA
|
A:ASP347
|
4.8
|
36.3
|
1.0
|
|
N
|
A:GLY350
|
4.9
|
31.2
|
1.0
|
|
C
|
A:ASP347
|
4.9
|
35.4
|
1.0
|
|
Calcium binding site 5 out
of 8 in 6hr1
Go back to
Calcium Binding Sites List in 6hr1
Calcium binding site 5 out
of 8 in the Crystal Structure of the Yfpnano Fusion Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:50.9
occ:1.00
|
O
|
B:THR278
|
2.4
|
59.3
|
1.0
|
|
OE1
|
B:GLU283
|
2.4
|
47.3
|
1.0
|
|
O
|
B:HOH692
|
2.4
|
53.5
|
1.0
|
|
OD1
|
B:ASP272
|
2.4
|
54.8
|
1.0
|
|
OD1
|
B:ASP276
|
2.5
|
58.5
|
1.0
|
|
OD1
|
B:ASP274
|
2.5
|
48.3
|
1.0
|
|
OE2
|
B:GLU283
|
2.6
|
60.0
|
1.0
|
|
CD
|
B:GLU283
|
2.8
|
55.5
|
1.0
|
|
CG
|
B:ASP276
|
3.4
|
61.7
|
1.0
|
|
CG
|
B:ASP274
|
3.5
|
54.7
|
1.0
|
|
C
|
B:THR278
|
3.6
|
53.5
|
1.0
|
|
CG
|
B:ASP272
|
3.6
|
53.6
|
1.0
|
|
OD2
|
B:ASP276
|
3.8
|
61.4
|
1.0
|
|
OD2
|
B:ASP274
|
3.8
|
69.1
|
1.0
|
|
OG1
|
B:THR278
|
4.1
|
54.7
|
1.0
|
|
CA
|
B:ASP272
|
4.1
|
48.6
|
1.0
|
|
CG
|
B:GLU283
|
4.2
|
53.1
|
1.0
|
|
CG2
|
B:THR280
|
4.4
|
49.8
|
1.0
|
|
N
|
B:ASP276
|
4.4
|
62.4
|
1.0
|
|
CB
|
B:ASP272
|
4.4
|
46.6
|
1.0
|
|
N
|
B:ASP274
|
4.4
|
62.4
|
1.0
|
|
C
|
B:ASP272
|
4.4
|
49.0
|
1.0
|
|
N
|
B:THR278
|
4.4
|
61.1
|
1.0
|
|
N
|
B:ILE279
|
4.5
|
51.5
|
1.0
|
|
N
|
B:LYS273
|
4.5
|
42.2
|
1.0
|
|
CA
|
B:ILE279
|
4.5
|
53.6
|
1.0
|
|
OD2
|
B:ASP272
|
4.5
|
57.7
|
1.0
|
|
CB
|
B:ASP276
|
4.5
|
55.0
|
1.0
|
|
CA
|
B:THR278
|
4.5
|
55.9
|
1.0
|
|
N
|
B:GLY275
|
4.7
|
50.1
|
1.0
|
|
CB
|
B:ASP274
|
4.7
|
56.8
|
1.0
|
|
N
|
B:THR280
|
4.8
|
41.2
|
1.0
|
|
CA
|
B:ASP276
|
4.9
|
60.3
|
1.0
|
|
CA
|
B:ASP274
|
4.9
|
61.6
|
1.0
|
|
C
|
B:ASP274
|
4.9
|
56.1
|
1.0
|
|
CB
|
B:THR278
|
5.0
|
57.9
|
1.0
|
|
Calcium binding site 6 out
of 8 in 6hr1
Go back to
Calcium Binding Sites List in 6hr1
Calcium binding site 6 out
of 8 in the Crystal Structure of the Yfpnano Fusion Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca502
b:23.8
occ:1.00
|
O
|
B:HOH741
|
2.2
|
31.4
|
1.0
|
|
O
|
B:TYR351
|
2.3
|
25.4
|
1.0
|
|
OD1
|
B:ASP345
|
2.3
|
30.1
|
1.0
|
|
OD1
|
B:ASN349
|
2.4
|
21.7
|
1.0
|
|
OD1
|
B:ASP347
|
2.5
|
30.5
|
1.0
|
|
OE2
|
B:GLU356
|
2.5
|
27.7
|
1.0
|
|
OE1
|
B:GLU356
|
2.5
|
25.0
|
1.0
|
|
CD
|
B:GLU356
|
2.8
|
26.8
|
1.0
|
|
CG
|
B:ASN349
|
3.3
|
28.3
|
1.0
|
|
CG
|
B:ASP347
|
3.4
|
31.1
|
1.0
|
|
C
|
B:TYR351
|
3.5
|
24.6
|
1.0
|
|
CG
|
B:ASP345
|
3.5
|
28.2
|
1.0
|
|
OD2
|
B:ASP347
|
3.8
|
32.7
|
1.0
|
|
ND2
|
B:ASN349
|
3.9
|
27.7
|
1.0
|
|
N
|
B:ASN349
|
4.1
|
26.0
|
1.0
|
|
N
|
B:TYR351
|
4.1
|
24.3
|
1.0
|
|
N
|
B:ASP347
|
4.2
|
25.2
|
1.0
|
|
OD2
|
B:ASP345
|
4.3
|
26.0
|
1.0
|
|
CA
|
B:TYR351
|
4.3
|
23.3
|
1.0
|
|
CG
|
B:GLU356
|
4.3
|
22.5
|
1.0
|
|
CA
|
B:ASP345
|
4.4
|
27.4
|
1.0
|
|
CB
|
B:ASN349
|
4.4
|
25.2
|
1.0
|
|
N
|
B:ILE352
|
4.4
|
22.2
|
1.0
|
|
CB
|
B:ASP345
|
4.4
|
26.7
|
1.0
|
|
C
|
B:ASP345
|
4.4
|
29.9
|
1.0
|
|
N
|
B:GLY348
|
4.5
|
25.6
|
1.0
|
|
CA
|
B:ILE352
|
4.5
|
23.4
|
1.0
|
|
N
|
B:LYS346
|
4.5
|
31.7
|
1.0
|
|
CB
|
B:ASP347
|
4.5
|
26.3
|
1.0
|
|
N
|
B:SER353
|
4.6
|
21.6
|
1.0
|
|
OE1
|
B:GLN387
|
4.7
|
33.0
|
1.0
|
|
CA
|
B:ASN349
|
4.7
|
26.5
|
1.0
|
|
CA
|
B:ASP347
|
4.7
|
28.3
|
1.0
|
|
C
|
B:ASP347
|
4.7
|
28.4
|
1.0
|
|
CB
|
B:TYR351
|
4.7
|
22.8
|
1.0
|
|
N
|
B:GLY350
|
4.8
|
24.6
|
1.0
|
|
O
|
B:ASP345
|
4.9
|
29.6
|
1.0
|
|
C
|
B:ASN349
|
5.0
|
27.1
|
1.0
|
|
C
|
B:ILE352
|
5.0
|
20.4
|
1.0
|
|
Calcium binding site 7 out
of 8 in 6hr1
Go back to
Calcium Binding Sites List in 6hr1
Calcium binding site 7 out
of 8 in the Crystal Structure of the Yfpnano Fusion Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca503
b:79.5
occ:1.00
|
OD1
|
B:ASN312
|
2.3
|
76.2
|
1.0
|
|
O
|
B:THR314
|
2.4
|
67.5
|
1.0
|
|
OE2
|
B:GLU319
|
2.5
|
74.8
|
1.0
|
|
O
|
B:HOH691
|
2.6
|
67.2
|
1.0
|
|
OE1
|
B:GLU319
|
2.6
|
77.8
|
1.0
|
|
OD1
|
B:ASP308
|
2.8
|
77.2
|
1.0
|
|
CD
|
B:GLU319
|
2.9
|
79.5
|
1.0
|
|
OD1
|
B:ASP310
|
2.9
|
78.0
|
1.0
|
|
CG
|
B:ASN312
|
3.2
|
76.7
|
1.0
|
|
OD2
|
B:ASP310
|
3.4
|
81.7
|
1.0
|
|
CG
|
B:ASP310
|
3.4
|
81.4
|
1.0
|
|
C
|
B:THR314
|
3.6
|
64.1
|
1.0
|
|
ND2
|
B:ASN312
|
3.7
|
74.2
|
1.0
|
|
CG
|
B:ASP308
|
4.0
|
75.5
|
1.0
|
|
OD2
|
B:ASP316
|
4.0
|
87.6
|
1.0
|
|
N
|
B:ASP316
|
4.1
|
62.2
|
1.0
|
|
CG
|
B:ASP316
|
4.3
|
81.2
|
1.0
|
|
CB
|
B:ASN312
|
4.3
|
75.3
|
1.0
|
|
CA
|
B:ILE315
|
4.4
|
63.3
|
1.0
|
|
CG
|
B:GLU319
|
4.4
|
73.5
|
1.0
|
|
N
|
B:ILE315
|
4.4
|
53.5
|
1.0
|
|
N
|
B:THR314
|
4.5
|
67.5
|
1.0
|
|
O
|
B:HOH722
|
4.5
|
64.6
|
1.0
|
|
OD1
|
B:ASP316
|
4.6
|
68.1
|
1.0
|
|
OG1
|
B:THR314
|
4.6
|
68.3
|
1.0
|
|
N
|
B:ASN312
|
4.6
|
80.5
|
1.0
|
|
CA
|
B:THR314
|
4.6
|
68.1
|
1.0
|
|
N
|
B:ASP310
|
4.6
|
85.8
|
1.0
|
|
C
|
B:ILE315
|
4.6
|
61.5
|
1.0
|
|
OD2
|
B:ASP308
|
4.7
|
76.0
|
1.0
|
|
CA
|
B:ASP308
|
4.7
|
72.3
|
1.0
|
|
CB
|
B:ASP310
|
4.8
|
75.6
|
1.0
|
|
N
|
B:ALA309
|
4.8
|
76.3
|
1.0
|
|
CB
|
B:ASP316
|
4.9
|
72.6
|
1.0
|
|
CB
|
B:ASP308
|
4.9
|
72.7
|
1.0
|
|
CA
|
B:ASN312
|
4.9
|
75.1
|
1.0
|
|
Calcium binding site 8 out
of 8 in 6hr1
Go back to
Calcium Binding Sites List in 6hr1
Calcium binding site 8 out
of 8 in the Crystal Structure of the Yfpnano Fusion Protein
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca504
b:21.8
occ:1.00
|
OD1
|
B:ASP381
|
2.3
|
20.4
|
1.0
|
|
O
|
B:GLN387
|
2.3
|
22.9
|
1.0
|
|
O
|
B:HOH643
|
2.3
|
23.8
|
1.0
|
|
OE2
|
B:GLU392
|
2.3
|
22.2
|
1.0
|
|
OD1
|
B:ASP383
|
2.4
|
23.0
|
1.0
|
|
OD1
|
B:ASP385
|
2.4
|
28.5
|
1.0
|
|
OE1
|
B:GLU392
|
2.6
|
20.4
|
1.0
|
|
CD
|
B:GLU392
|
2.8
|
22.6
|
1.0
|
|
CG
|
B:ASP383
|
3.3
|
31.9
|
1.0
|
|
CG
|
B:ASP385
|
3.3
|
29.8
|
1.0
|
|
CG
|
B:ASP381
|
3.4
|
27.3
|
1.0
|
|
C
|
B:GLN387
|
3.5
|
21.0
|
1.0
|
|
OD2
|
B:ASP383
|
3.6
|
29.6
|
1.0
|
|
OD2
|
B:ASP385
|
3.6
|
29.8
|
1.0
|
|
CA
|
B:ASP381
|
4.2
|
21.8
|
1.0
|
|
CB
|
B:ASP381
|
4.2
|
23.0
|
1.0
|
|
N
|
B:GLN387
|
4.2
|
20.8
|
1.0
|
|
N
|
B:ASP383
|
4.2
|
21.7
|
1.0
|
|
N
|
B:ASP385
|
4.3
|
26.0
|
1.0
|
|
CG
|
B:GLU392
|
4.3
|
18.3
|
1.0
|
|
OD2
|
B:ASP381
|
4.3
|
25.9
|
1.0
|
|
N
|
B:ASN389
|
4.3
|
22.8
|
1.0
|
|
N
|
B:VAL388
|
4.3
|
19.9
|
1.0
|
|
CA
|
B:VAL388
|
4.3
|
17.8
|
1.0
|
|
N
|
B:ILE382
|
4.4
|
23.6
|
1.0
|
|
N
|
B:GLY384
|
4.4
|
25.4
|
1.0
|
|
CA
|
B:GLN387
|
4.5
|
21.6
|
1.0
|
|
CB
|
B:ASP383
|
4.5
|
29.8
|
1.0
|
|
CB
|
B:ASP385
|
4.5
|
24.1
|
1.0
|
|
C
|
B:ASP381
|
4.7
|
28.8
|
1.0
|
|
CA
|
B:ASP383
|
4.7
|
24.6
|
1.0
|
|
C
|
B:ASP383
|
4.8
|
28.4
|
1.0
|
|
N
|
B:GLY386
|
4.8
|
26.0
|
1.0
|
|
C
|
B:VAL388
|
4.8
|
21.1
|
1.0
|
|
CA
|
B:ASP385
|
4.8
|
27.6
|
1.0
|
|
CG
|
B:ASN389
|
5.0
|
20.1
|
1.0
|
|
Reference:
R.M.B.Benoit,
R.M.Benoit.
N/A N/A.
Page generated: Tue Jul 16 08:30:23 2024
|
