Calcium in PDB 6hr5: Structure of the S1_25 Family Sulfatase Module of the Rhamnosidase FA22250 From Formosa Agariphila

Protein crystallography data

The structure of Structure of the S1_25 Family Sulfatase Module of the Rhamnosidase FA22250 From Formosa Agariphila, PDB code: 6hr5 was solved by T.Roret, A.Prechoux, M.Czjzek, G.Michel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.61 / 2.91
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.879, 48.871, 92.651, 90.00, 105.64, 90.00
R / Rfree (%) 32.2 / 36.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the S1_25 Family Sulfatase Module of the Rhamnosidase FA22250 From Formosa Agariphila (pdb code 6hr5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of the S1_25 Family Sulfatase Module of the Rhamnosidase FA22250 From Formosa Agariphila, PDB code: 6hr5:

Calcium binding site 1 out of 1 in 6hr5

Go back to Calcium Binding Sites List in 6hr5
Calcium binding site 1 out of 1 in the Structure of the S1_25 Family Sulfatase Module of the Rhamnosidase FA22250 From Formosa Agariphila


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the S1_25 Family Sulfatase Module of the Rhamnosidase FA22250 From Formosa Agariphila within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca500

b:35.5
occ:1.00
OD1 A:ASP18 2.3 17.2 1.0
OD1 A:ASP19 2.3 12.8 1.0
OD1 A:ASN285 2.3 20.6 1.0
N A:ASP19 2.8 15.3 1.0
OD2 A:ASP284 2.9 32.4 1.0
CB A:CYS58 3.0 23.8 1.0
CG A:ASP19 3.2 13.7 1.0
CG A:ASP18 3.3 16.8 1.0
CG A:ASN285 3.3 21.9 1.0
CA A:ASP19 3.4 19.7 1.0
C A:ASP18 3.5 17.4 1.0
CG A:ASP284 3.5 25.0 1.0
CB A:ASP284 3.5 18.7 1.0
CA A:ASP18 3.6 16.2 1.0
ND2 A:ASN285 3.7 24.6 1.0
CB A:ASP19 3.8 15.6 1.0
CA A:CYS58 4.0 24.0 1.0
CB A:ASP18 4.0 16.3 1.0
OD2 A:ASP18 4.1 27.7 1.0
OD2 A:ASP19 4.1 15.1 1.0
N A:ASN285 4.2 18.4 1.0
SG A:CYS58 4.3 34.5 1.0
ND1 A:HIS182 4.4 10.6 1.0
O A:ASP18 4.5 18.6 1.0
CB A:ASN285 4.6 22.5 1.0
C A:ASP284 4.6 16.5 1.0
OD1 A:ASP284 4.6 31.0 1.0
CA A:ASP284 4.6 17.8 1.0
N A:CYS58 4.7 26.8 1.0
C A:ASP19 4.9 18.1 1.0
NH2 A:ARG62 4.9 20.3 1.0
NZ A:LYS297 4.9 12.5 1.0
CA A:ASN285 4.9 20.5 1.0
NZ A:LYS108 5.0 23.8 1.0
O A:THR17 5.0 18.5 1.0
N A:ASP18 5.0 13.8 1.0

Reference:

L.Reisky, A.Prechoux, M.K.Zuhlke, M.Baumgen, C.S.Robb, N.Gerlach, T.Roret, C.Stanetty, R.Larocque, G.Michel, T.Song, S.Markert, F.Unfried, M.D.Mihovilovic, A.Trautwein-Schult, D.Becher, T.Schweder, U.T.Bornscheuer, J.H.Hehemann. A Marine Bacterial Enzymatic Cascade Degrades the Algal Polysaccharide Ulvan. Nat.Chem.Biol. V. 15 803 2019.
ISSN: ESSN 1552-4469
PubMed: 31285597
DOI: 10.1038/S41589-019-0311-9
Page generated: Sat Dec 12 06:10:11 2020

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